Tea Plant Related Database
TPIA - Tea Plant Information Archive
TMDB - Tea Metabolome Database
TBC2health - a database of experimentally validated health-beneficial effects of tea bioactive compounds
TBC2target - a resource of predicted target genes of tea bioactive compounds
Assam Tea Genome Database - a genomic database for Assam tea (Camellia sinensis var. assamica)
TeaAS - database for alternative splicing in tea plant.
TeaMiD - a comprehensive database of simple sequence repeat markers of tea.
TeaCoN - a database of gene co-expression network for tea plant.
Plant Genome Databases
TAIR (http://www.arabidopsis.org/index.jsp)
MaizeGDB (http://www.maizegdb.org/)
Medicago truncatula - A model for legume research (http://www.medicago.org/)
SoyBase and the Soybean Breeder's Toolbox (http://soybase.org/)
Rice genome database (http://rgp.dna.affrc.go.jp/)
Citrus genome database (https://www.citrusgenomedb.org/)
Pineapple genome database (http://pineapple.angiosperms.org/pineapple/html/index.html)
KGG - Kiwifruit Genome Database
GDR - Genome Database For Rosaceae
Cucumber genome database (http://cucumber.genomics.org.cn/page/cucumber/index.jsp)
AppleGFDB (http://gfdb.sdau.edu.cn/)
Welcome to the Cacao Genome Project | Cacao Genome Database (http://www.cacaogenomedb.org/)
BRAD-Brassica Database (http://brassicadb.org/brad/)
B. oleracea Genome Database (http://ocri-genomics.org/bolbase)
Brassica.info (http://www.brassica.info/resource/databases.php)
AAFC Comparative Genome Viewer (http://brassica.agr.gc.ca/navigation/viewer_e.shtml)
Korea B. rapa genomics (http://www.brassica-rapa.org/BGP/NC_brgp.jsp)
PGDD PGDD - Plant Genome Duplication Database
An online database for genome information of agricultural plants.(http://nabic.naas.go.kr/)
OGDA - A comprehensive organelle genome database for algae.
The PEDANT genome database (http://pedant.gsf.de)
An online database for genome information of agricultural plants. (http://nabic.naas.go.kr/)
MAtDB - An integrated biological knowledge resource based on the first complete plant genome
Brassica ASTRA - An integrated database for Brassica genomic research
Resource Databases
PlantGDB (http://www.plantgdb.org/)
JGI (http://www.jgi.doe.gov/)
Phytozome (http://www.phytozome.net/)
Entrez Genome Database (http://www.ncbi.nlm.nih.gov/sites/genome)
DOGS-Database Of Genome Sizes (http://www.cbs.dtu.dk/databases/DOGS/)
PGDD - Plant Genome Duplication Database (http://chibba.agtec.uga.edu/duplication/)
MIPS (http://www.helmholtz-muenchen.de/en/ibis)
GRAMENE-Plant Genomic Resources (http://www.gramene.org/)
SGN - Sol Genomics Network (http://www.sgn.cornell.edu/)
Welcome to the Genome Database for Rosaceae | GDR (http://www.rosaceae.org/)
Genome
BGI-RISe - Beijing Genomics Institute Rice Information System.
RAP-DB - Rice Annotation Project Database.
MSU-RAP - The MSU Rice Genome Annotation Project Database and Resource.
MOsDB - A resource for publicly available sequences of the rice (Oryza sativa L.) genome.
MIPS - a database for genomes and protein sequences
The YH databasePS - the first Asian diploid genome database
CpGDB - A Comprehensive Database of Chloroplast Genomes.
GIB - data retrieval and comparative analysis system for completed microbial genomes and more
PGDBj - A Portal Website for the Integration of Plant Genome-Related Databases
CottonGen - A genomics, genetics and breeding database for cotton research
NGD - An integrative resource for gene expression and variants of Nelumbo nucifera
Variation
IC4R Rice Variation Database - Collected almost all the public available re-sequenced rice accessions (5152), and identified about 18M SNPs.
RMD - Rice Mutant Database.
RiceVarMap - Rice Variation Map, SNPs and indels.
SNP-Seek - This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.).
Expression
RiceFREND - Rice Functionally Related gene Expression Network Database.
RED - An integrated RNA-Seq-derived gene expression database for rice.
MCDRP - An unique manually curated database based on published experimental data.
OryGenesDB - An integrated tool for Rice reverse genetics.
OrysPSSP - Small secreted proteins from rice. (temporarily unavailable)
RiceXPro - Rice transcriptome under natural conditions.
RicePLEX - MIAME/Plant-compliant and Plant Ontology enhanced expression resources for rice.
CREP - Collection of Rice Expression Profiles.
Other
OryzaGenome2.1 - Database of Diverse Genotypes in Wild Oryza Species.
PODB - A collection of visualized plant organelles and protocols for plant organelle research.
RetrOryza - The research community with the most complete resource on LTR-retrotransposon for rice.
RiceGeneThresher - A public online resource for mining genes underlying genome regionsof interest or quantitatie trait loci (QTLs) in the rice genome.
Oryza Tag Line - To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare).
DRTF - DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica.
IC4R - Information Commons for Rice.
RiceWiki - A wiki-based database for community curation of rice genes.
IRIS - International Rice Information System.
Oryzabase- A comprehensive rice science database.
Rice Pipeline - Unification tool for rice databases. (temporarily unavailable)
RPD - Rice proteome database.
RiceGAAS - Rice genome automated annotation system.
Rice TOGO Browser - A platform to retrieve integrated information on rice functional and applied genomics.
OryzaPG-DB - Rice Proteome Database based on Shotgun Proteogenomics.
The COG database - A tool for genome-scale analysis of protein functions and evolution
The COG database - A tool for genome-scale analysis of protein functions and evolution
Plant Retrocopied Gene DataBase - A Database of Plant Retrocopied Genes
ATIDB - Arabidopsis thaliana insertion database
PCSD - a plant chromatin state database
PLncDB - plant long non-coding RNA database
PTGBase - An integrated database to study tandem duplicated genes in plants
WFRGdb - An integrated database of wood-formation related genes in plants
STPD - A comprehensive database for studying tree salt-tolerant adaption and poplar genomics
RetrOryza - A database of the rice LTR-retrotransposons
RAD - A contig-oriented database for map-based rice genomics
CATMA - A complete Arabidopsis GST database
OGDA - A comprehensive organelle genome database for algae