Tea Plant Related Database

TPIA - Tea Plant Information Archive

TMDB - Tea Metabolome Database

TBC2health - a database of experimentally validated health-beneficial effects of tea bioactive compounds

TBC2target - a resource of predicted target genes of tea bioactive compounds

Assam Tea Genome Database - a genomic database for Assam tea (Camellia sinensis var. assamica)

TeaAS - database for alternative splicing in tea plant.

TeaMiD - a comprehensive database of simple sequence repeat markers of tea.

TeaCoN - a database of gene co-expression network for tea plant.

Plant Genome Databases

TAIR  (http://www.arabidopsis.org/index.jsp)

MaizeGDB (http://www.maizegdb.org/)

Medicago truncatula - A model for legume research (http://www.medicago.org/)

SoyBase and the Soybean Breeder's Toolbox (http://soybase.org/)

Rice genome database (http://rgp.dna.affrc.go.jp/)

Citrus genome database (https://www.citrusgenomedb.org/)

Pineapple genome database (http://pineapple.angiosperms.org/pineapple/html/index.html)

KGG - Kiwifruit Genome Database

GDR - Genome Database For Rosaceae

Cucumber genome database (http://cucumber.genomics.org.cn/page/cucumber/index.jsp)

AppleGFDB (http://gfdb.sdau.edu.cn/)

Welcome to the Cacao Genome Project | Cacao Genome Database (http://www.cacaogenomedb.org/)

BRAD-Brassica Database (http://brassicadb.org/brad/)

B. oleracea Genome Database (http://ocri-genomics.org/bolbase)

Brassica.info (http://www.brassica.info/resource/databases.php)

AAFC Comparative Genome Viewer (http://brassica.agr.gc.ca/navigation/viewer_e.shtml)

Korea B. rapa genomics (http://www.brassica-rapa.org/BGP/NC_brgp.jsp)

PGDD PGDD - Plant Genome Duplication Database

An online database for genome information of agricultural plants.(http://nabic.naas.go.kr/)

OGDA - A comprehensive organelle genome database for algae.

The PEDANT genome database (http://pedant.gsf.de)

An online database for genome information of agricultural plants. (http://nabic.naas.go.kr/)

MAtDB - An integrated biological knowledge resource based on the first complete plant genome

Brassica ASTRA - An integrated database for Brassica genomic research

Resource Databases

PlantGDB  (http://www.plantgdb.org/)

JGI (http://www.jgi.doe.gov/)

Phytozome (http://www.phytozome.net/)

Entrez Genome Database (http://www.ncbi.nlm.nih.gov/sites/genome)

DOGS-Database Of Genome Sizes (http://www.cbs.dtu.dk/databases/DOGS/)

PGDD - Plant Genome Duplication Database (http://chibba.agtec.uga.edu/duplication/)

MIPS (http://www.helmholtz-muenchen.de/en/ibis)

GRAMENE-Plant Genomic Resources (http://www.gramene.org/)

SGN - Sol Genomics Network (http://www.sgn.cornell.edu/)

Welcome to the Genome Database for Rosaceae | GDR (http://www.rosaceae.org/)

Genome

BGI-RISe - Beijing Genomics Institute Rice Information System.

RAP-DB - Rice Annotation Project Database.

MSU-RAP - The MSU Rice Genome Annotation Project Database and Resource.

MOsDB - A resource for publicly available sequences of the rice (Oryza sativa L.) genome.

MIPS - a database for genomes and protein sequences

The YH databasePS - the first Asian diploid genome database

CpGDB - A Comprehensive Database of Chloroplast Genomes.

GIB - data retrieval and comparative analysis system for completed microbial genomes and more

PGDBj - A Portal Website for the Integration of Plant Genome-Related Databases

CottonGen - A genomics, genetics and breeding database for cotton research

NGD - An integrative resource for gene expression and variants of Nelumbo nucifera

Variation

IC4R Rice Variation Database - Collected almost all the public available re-sequenced rice accessions (5152), and identified about 18M SNPs.

RMD - Rice Mutant Database.

RiceVarMap - Rice Variation Map, SNPs and indels.

SNP-Seek - This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.).

Expression

RiceFREND - Rice Functionally Related gene Expression Network Database.

RED - An integrated RNA-Seq-derived gene expression database for rice.

MCDRP - An unique manually curated database based on published experimental data.

OryGenesDB - An integrated tool for Rice reverse genetics.

OrysPSSP - Small secreted proteins from rice. (temporarily unavailable)

RiceXPro - Rice transcriptome under natural conditions.

RicePLEX - MIAME/Plant-compliant and Plant Ontology enhanced expression resources for rice.

CREP - Collection of Rice Expression Profiles.

Other

OryzaGenome2.1 - Database of Diverse Genotypes in Wild Oryza Species.

PODB - A collection of visualized plant organelles and protocols for plant organelle research.

RetrOryza - The research community with the most complete resource on LTR-retrotransposon for rice.

RiceGeneThresher - A public online resource for mining genes underlying genome regionsof interest or quantitatie trait loci (QTLs) in the rice genome.

Oryza Tag Line - To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare).

DRTF - DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica.

IC4R - Information Commons for Rice.

RiceWiki - A wiki-based database for community curation of rice genes.

IRIS - International Rice Information System.

Oryzabase- A comprehensive rice science database.

Rice Pipeline - Unification tool for rice databases. (temporarily unavailable)

RPD - Rice proteome database.

RiceGAAS - Rice genome automated annotation system.

Rice TOGO Browser - A platform to retrieve integrated information on rice functional and applied genomics.

OryzaPG-DB - Rice Proteome Database based on Shotgun Proteogenomics.

The COG database - A tool for genome-scale analysis of protein functions and evolution

The COG database - A tool for genome-scale analysis of protein functions and evolution

Plant Retrocopied Gene DataBase - A Database of Plant Retrocopied Genes

ATIDB - Arabidopsis thaliana insertion database

PCSD - a plant chromatin state database

PLncDB - plant long non-coding RNA database

PTGBase - An integrated database to study tandem duplicated genes in plants

WFRGdb - An integrated database of wood-formation related genes in plants

STPD - A comprehensive database for studying tree salt-tolerant adaption and poplar genomics

RetrOryza - A database of the rice LTR-retrotransposons

RAD - A contig-oriented database for map-based rice genomics

CATMA - A complete Arabidopsis GST database

OGDA - A comprehensive organelle genome database for algae