Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA016112.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA016112.1 |
KEGG Orthology
Gene Family
Chal_sti_synt_N
Gene Attributes
| Chromosome: | Sc0000277 |
| Cds Coordinates: | 468504-469022 |
| Nucleotide length: | 518 |
| Prodicted protein length: | 173 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016039 | Gene3D | 1 | 111 | Thiolase-like |
| IPR001099 | Pfam | 1 | 32 | Chalcone/stilbene synthase, N-terminal |
| IPR016039 | SUPERFAMILY | 20 | 83 | Thiolase-like |
| IPR011141 | PANTHER | 2 | 82 | Polyketide synthase, type III |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028237596 | 97.391 | 230 | 1.03e-104 |
| AY146707 | 96.567 | 233 | 4.77e-103 |
| AY146700 | 95.708 | 233 | 1.03e-99 |
| AY146699 | 96.444 | 225 | 1.34e-98 |
| XM_028270488 | 95.279 | 233 | 4.80e-98 |
| AY146711 | 95.614 | 228 | 6.21e-97 |
| XM_028222238 | 100 | 50 | 1.16e-14 |
| XR_003649282 | 98 | 50 | 5.42e-13 |