miRNA search

Identified miRNAs	LM(nt)	miRNA sequences	Input sequence	Strand	Location	LP(nt)	MFEs(DG)	MFEI
lme-miR156a	20	UGACAGAAGAGAGUGAGCAC	scaffold675	+/+	5'	91	-44.3	1.05
lme-miR156a-3p	22	GCUCACUGCUCUUUCUGUCAGA	scaffold568	+/+	3'	128	-47.9	0.87
lme-miR156b-3p	23	UGCUCACCUCUCUUUCUGUCAGU	scaffold236	+/+	3'	101	-45.5	0.97
lme-miR156c-3p	22	GCUCACUGCUCUAUCUGUCAGA	scaffold675	+/+	3'	86	-43.8	1.07
lme-miR157a	21	UUGACAGAAGAUAGAGAGCAC	scaffold344	+/+	5'	131	-49.4	1.01
lme-miR157a-3p	21	GCUCUCUAGCCUUCUGUCAUC	scaffold78	+/+	3'	86	-44.4	1.35
lme-miR157c-3p	21	GCUCUCUAUACUUCUGUCACC	scaffold344	+/+	3'	151	-54.9	0.96
lme-miR159c	21	UUUGGAUUGAAGGGAGCUCCU	scaffold613	+/-	3'	201	-66.6	0.89
lme-miR160a	21	UGCCUGGCUCCCUGUAUGCCA	scaffold249	+/+	5'	81	-45.7	1.04
lme-miR160a-3p	21	GCGUAUGAGGAGCCAUGCAUA	scaffold249	+/+	3'	96	-48.7	0.99
lme-miR160c-3p	21	CGUACAAGGAGUCAAGCAUGA	scaffold468	+/-	3'	90	-40.3	1.03
lme-miR161.2	21	UCAAUGCAUUGAAAGUGACUA	scaffold216	+/+	5'	102	-40.2	0.91
lme-miR162a	22	UGGAGGCAGCGGUUCAUCGAUC	scaffold1363	+/+	5'	116	-37.2	0.77
lme-miR162a-3p	21	UCGAUAAACCUCUGCAUCCAG	scaffold1363	+/+	3'	131	-44.3	0.76
lme-miR164a	21	UGGAGAAGCAGGGCACGUGCA	scaffold668	+/-	5'	126	-45.2	0.92
lme-miR164c	21	UGGAGAAGCAGGGCACGUGCG	scaffold369	+/+	5'	83	-38.9	0.97
lme-miR165a	22	UGGAGGCAGCGGUUCAUCGAUC	scaffold1363	+/+	5'	117	-41.9	0.86
lme-miR165a-3p	21	UCGGACCAGGCUUCAUCCCCC	scaffold830	+/+	3'	125	-45.4	1.05
lme-miR166a	21	GGACUGUUGUCUGGCUCGAGG	scaffold316	+/+	5'	151	-64.3	1.07
lme-miR166a-3p	21	UCGGACCAGGCUUCAUUCCCC	scaffold774	+/+	3'	92	-32.3	0.73
lme-miR167a	21	UGAAGCUGCCAGCAUGAUCUA	scaffold785	+/+	5'	97	-50.7	1.24
lme-miR167c	21	UAAGCUGCCAGCAUGAUCUUG	scaffold695	+/-	5'	146	-68	1.26
lme-miR168a	21	UCGCUUGGUGCAGGUCGGGAA	scaffold468	+/-	5'	101	-46.6	0.91
lme-miR168a-3p	21	CCCGCCUUGCAUCAACUGAAU	scaffold369	+/+	3'	101	-47.4	0.89
lme-miR169a	21	CAGCCAAGGAUGACUUGCCGA	scaffold191	+/+	5'	227	-67.8	1.09
lme-miR169b	21	CAGCCAAGGAUGACUUGCCGG	scaffold872	+/+	5'	216	-59.5	0.94
lme-miR169d	21	UGAGCCAAGGAUGACUUGCCG	scaffold792	+/+	5'	121	-45.9	0.9
lme-miR169h	21	UAGCCAAGGAUGACUUGCCUG	scaffold1032	+/+	5'	131	-43.3	0.92
lme-miR169b-3p	22	GGCAAGUUGUCCUUCGGCUACA	scaffold467	+/+	3'	112	-58.6	1.43
lme-miRmiR170	21	UAUUGGCCUGGUUCACUCAGA	scaffold1132	+/+	5'	83	-33.6	0.96
lme-miR170-3p	21	UGAUUGAGCCGUGUCAAUAUC	scaffold1132	+/-	3'	81	-27.4	0.78
lme-miR171b	21	AGAUAUUAGUGCGGUUCAAUC	scaffold490	+/-	5'	91	-36.8	0.99
lme-miR171a-3p	21	UGAUUGAGCCGCGCCAAUAUC	scaffold299	+/+	3'	85	-33.6	0.93
lme-miR171b-3p	21	UUGAGCCGUGCCAAUAUCACG	scaffold433	+/+	3'	96	-40.3	1.01
lme-miR172a	21	AGAAUCUUGAUGAUGCUGCAU	scaffold981	+/+	3'	105	-35.9	1.12
lme-miR172c	21	AGAAUCUUGAUGAUGCUGCAG	scaffold997	+/+	3'	106	-40.7	1.13
lme-miR319a	21	UUGGACUGAAGGGAGCUCCCU	scaffold1047	+/+	3'	181	-76.2	1.14
lme-miR319c	21	UUGGACUGAAGGGAGCUCCUU	scaffold488	+/-	3'	173	-69.6	0.98
lme-miR390a	21	AAGCUCAGGAGGGAUAGCGCC	scaffold237	+/+	5'	91	-43.4	1.11
lme-miR391	21	UUCGCAGGAGAGAUAGCGCCA	scaffold432	+/+	5'	82	-34.8	0.87
lme-miR391-3p	21	ACGGUAUCUCUCCUACGUAGC	scaffold432	+/+	3'	87	-36.3	0.84
lme-miR393a	22	UCCAAAGGGAUCGCAUUGAUCC	scaffold997	+/+	5'	156	-53.9	1
lme-miR393b-3p	21	AUCAUGCGAUCUCUUUGGAUU	scaffold997	+/+	3'	141	-50.9	1.04
lme-miR394a	20	UUGGCAUUCUGUCCACCUCC	scaffold420	+/+	5'	126	-47	0.85
lme-miR394b-3p	21	AGGUGGGCAUACUGCCAAUAG	scaffold356	+/+	3'	111	-48.7	1.08
lme-miR395a	21	CUGAAGUGUUUGGGGGAACUC	scaffold904	+/-	3'	92	-44.3	1.1
lme-miR395b	21	CUGAAGUGUUUGGGGGGACUC	scaffold904	+/+	3'	106	-35.9	1
lme-miR396a	21	UUCCACAGCUUUCUUGAACUG	scaffold339	+/-	5'	106	-34.5	0.88
lme-miR396b	21	UUCCACAGCUUUCUUGAACUU	scaffold127	+/+	5'	132	-43.7	1.15
lme-miR396a-3p	21	GUUCAAUAAAGCUGUGGGAAG	scaffold306	+/+	3'	117	-41.3	0.96
lme-miR396b-3p	21	GCUCAAGAAAGCUGUGGGAAA	scaffold127	+/+	3'	156	-55.5	1.13
lme-miR397a	21	UCAUUGAGUGCAGCGUUGAUG	scaffold299	+/-	5'	96	-26.8	0.96
lme-miR398a-3p	21	UGUGUUCUCAGGUCACCCCUU	scaffold302	+/+	3'	101	-42.9	1.13
lme-miR398b-3p	21	UGUGUUCUCAGGUCACCCCUG	scaffold534	+/-	3'	115	-42.8	0.82
lme-miR399a	21	UGCCAAAGGAGAUUUGCCCUG	scaffold904	+/-	3'	126	-41.6	0.97
lme-miR399b	21	UGCCAAAGGAGAGUUGCCCUG	scaffold971	+/-	3'	146	-51.8	1.01
lme-miR399c-3p	21	UGCCAAAGGAGAGUUGCCCUG	scaffold971	+/-	3'	141	-51.2	1.04
lme-miR408	21	ACAGGGAACAAGCAGAGCAUG	scaffold613	+/+	5'	96	-39.5	0.9
lme-miR408-3p	21	AUGCACUGCCUCUUCCCUGGC	scaffold613	+/-	3'	101	-39.6	0.84
lme-miR828	22	UCUUGCUUAAAUGAGUAUUCCA	scaffold236	+/+	5'	101	-35.8	1.02
lme-miR2111a	21	UAAUCUGCAUCCUGAGGUUUA	scaffold668	+/+	5'	101	-38.3	1.18
lme-miR2111b-3p	21	AUCCUCGGGAUACAGUUUACC	scaffold602	+/+	3'	76	-29.9	1.11

Potential targets of identified maca miRNAs

miRNA	Targeted proteins (number)
156/157	Squamosa promoter-binding-like protein (24)
159	MYB (4)
159	Pectin acetylesterase (1)
159	Pyruvate orthophosphate dikinase (5)
160	Auxin response factor (4)
162	Cytochrome P450-like protein (1)
164	CUP-SHAPED COTYLEDON/CUC (3)
164	NAM protein-like (6)
165	HD-Zip protein (2)
166	HD-Zip protein (2)
168	Glutathione transferase (1)
171	Scarecrow-like protein (2)
171	Protein kinase (2)
172	APETALA 2 (8)
172	MYB (2)
319	MYB (3)
390	Protein kinase (1)
390	Glutamate dehydrogenase (1)
391	Protein kinase (2)
393	WRKY transcription factor (1)
394	F-box only protein (1)
394	Lipase-like protein (1)
394	Loricrin-like protein (1)
395	ATP sulfurylase (9)
395	Transcription factor bZIP (2)
397	Laccase precursor (3)
399	F-box protein (1)
399	Cytochrome P450-like protein (1)
408	Ethylene-responsive transcription factor (1)
828	Kinesin 2 (2)
2111	Flavanone 3-hydroxylase-like protein (2)

Search results

Identified miRNAs	LM(nt)	miRNA sequences	Input sequence	Strand	Location	LP(nt)	MFEs(DG)	MFEI