Powerful tools for visualizing O. fragrans genomic data.
Tools for organ specific expressional data and data download service.
Tools for visualing the metabolic pathways associated to understand the biology of O. fragrans.
Here, SOhub collected 48 cultivars for five major groups (Lutes group, Albus group, Aurantiacus group, Asiaticus group, and Colour group) of sweet olive (Osmanthus fragrans). These resources are useful for selecting future cultivars. Users are also welcome to share their cultivars with our readers.
We encourage users to submit their newly selected cultivar to this international official site, to register it as a novel cultivar. URL: icrco.njfu.edu.cn/index.HTM
The sweet olive genome hub (SOHUB) maintains a database of genetic and genomic data, as well as a series of built-in bioinformatics tools. SOHUB harbors data covering the high-quality genome sequence along with various annotations such as CDS, protein, gene families, synteny, transcription factor, gene expression data, phenotypes,ncRNA, molecular markers, publications, and news information about the sweet olive research community. The current SOHUB is V1.0 and will be updated every month with research advances. SOHUB is launched in january 2019.
| PacBio reads/Gb | 73.4Gb |
| GC/% | 34.3 |
| Genome coverage/% | ~100 |
| Total contig length/Mb | ~741 |
| Contig number | 774 |
| Contig N50/bp | 1,595,720 |
| Contig N50 number | 145 |
| Longest contig | 8,253,028 |
| Contig No. with Length >5kb | 765 |
| Total chromosome length/Mb | 748 |
| chromosome number | 23 |
| BUSCO | 96.10% |
| repeat element size/Mb | ~369 |
| Protein-coding gene number | 45,542 |
| miRNA number | 525 |
