Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao TEA022960.1 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | TEA022960.1 |
Gene Family
Epimerase,3Beta_HSD,NAD_binding_10,GDP_Man_Dehyd,NAD_binding_4,NmrA
Gene Attributes
| Chromosome: | chr5 |
| Cds Coordinates: | 193127104-193131065 |
| Nucleotide length: | 3961 |
| Prodicted protein length: | 341 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 12 | 261 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 8 | 334 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 12 | 261 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028199098 | 98.83 | 1026 | 0.0 |
| GU944768 | 98.83 | 1026 | 0.0 |
| MH236747 | 98.441 | 1026 | 0.0 |
| KY615701 | 98.148 | 1026 | 0.0 |
| AY641729 | 98.148 | 1026 | 0.0 |
| GU992400 | 97.953 | 1026 | 0.0 |
| HM003282 | 97.953 | 1026 | 0.0 |
| MG925481 | 97.466 | 1026 | 0.0 |