Camellia Sinensis Related Dataset

• Genome-Annotation
  • GO Annotation
    • Longjing-43_go.txt
    • Shuchazao(ahau)_go.txt
    • Shuchazao(tri)_go.txt
    • Yunkang-10_go.txt
    • Biyun_go.txt
    • Wildtea(dasz)_go.txt
    • Huangdan_go.txt
    • Tieguanyin_go.txt
    • Anhua_chl_go.tsv
    • Assamica_chl_go.tsv
    • Assamica_mit_go.tsv
    • Baijiguan_chl_go.tsv
    • Baiye1_chl_go.txt
    • Dahongpao_chl_go.tsv
    • Dehungensis_chl_go.tsv
    • Longjing43_chl_go.tsv
    • Narcissus_chl_go.tsv
    • Pubilimba_chl_go.tsv
    • Rougui_chl_go.tsv
    • Sangmok_chl_go.txt
    • Shuijingui_chl_go.tsv
    • Tieguanyin_chl_go.tsv
    • Tieluohan_chl_go.tsv
    • Yunkang10_chl_go.txt
    • Yunknag10_chr2_mit_go.tsv
    • Yunknag10_chr2_mit_go.tsv
  • KEGG Annotation
    • Biyun.txt
    • LJ43.txt
    • SCZ_2020ahau.txt
    • SCZ_2020hr.txt
    • YK10.txt
    • Wildtea.txt
    • Huangdan.txt
    • Tieguanyin.txt
    • Anhua_chloroplast_kegg.txt
    • Assamica_chloroplast_kegg.txt
    • Assamica_mitochondria_kegg.txt
    • Baijiguan_chloroplast_kegg.txt
    • Baiye1_chloroplast_kegg.txt
    • Dahongpao_chloroplast_kegg.txt
    • Dehungensis_chloroplast_kegg.txt
    • Longjing43_chloroplast_kegg.txt
    • Narcissus_chloroplast_kegg.txt
    • Pubilimba_chloroplast_kegg.txt
    • Rougui_chloroplast_kegg.txt
    • Sangmok_chloroplast_kegg.txt
    • Shuijingui_chloroplast_kegg.txt
    • Tieguanyin_chloroplast_kegg.txt
    • Tieluohan_chloroplast_kegg.txt
    • Yunkang10_chloroplast_kegg.txt
    • Yunknag10_chr2_mitochondria_kegg.txt
    • Yunknag10_chr2_mitochondria_kegg.txt
  • Interpro Annotation
    • Biyun_ipr.txt
    • Longjing-43_ipr.txt
    • Shuchazao(ahau)_ipr.txt
    • Shuchazao(tri)_ipr.txt
    • Wildtea(dasz)_ipr.txt
    • Yunkang-10_ipr.txt
    • Huangdan_ipr.txt
    • Tieguanyin_ipr.txt
    • Camellia_sinensis_organellar_genome_ipr.txt
  • Signalp Annotation
    • Biyun.signalp5
    • LJ43.signalp5
    • SCZ_2020ahau.signalp5
    • SCZ_2020hr.signalp5
    • Wildtea.signalp5
    • YK10.signalp5
    • Huangdan.signalp5
    • Tieguanyin.signalp5
    • Camellia_sinensis_Anhua_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Assamica_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Assamica_mitochondria_proteins_summary.signalp5
    • Camellia_sinensis_Baijiguan_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Yunkang10_chr1_mitochondria_proteins_summary.signalp5
    • Camellia_sinensis_baiye1_chloroplast_proteins_summary_signalp5
    • Camellia_sinensis_Dahongpao_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Dehungensis_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Longjing43_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Yunkang10_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Pubilimba_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Narcissusa_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Rougui_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Sangmok_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Shuijingui_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Tieluohan_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Tieguanyin_chloroplast_proteins_summary.signalp5
    • Camellia_sinensis_Yunkang10_chr1_mitochondria_proteins_summary.signalp5
  • Gene Family Annotation
    • Biyun.tbl
    • LJ43.txt
    • SCZ_2020ahau.txt
    • SCZ_2020hr_gf.txt
    • Wildtea.txt
    • YK10.txt
    • Huangdan.txt
    • Tieguanyin.txt
    • Anhua_chloroplast_family.tbl
    • Assamica_chloroplast_family.tbl
    • Assamica_mitochondria_family.tbl
    • Baijiguan_chloroplast_family.tbl
    • Baiye1_chloroplast_family.tbl
    • Dahongpao_chloroplast_family.tbl
    • Dehungensis_chloroplast_family.tbl
    • Longjing43_chloroplast_family.tbl
    • Narcissus_chloroplast_family.tbl
    • Pubilimba_chloroplast_family.tbl
    • Rougui_chloroplast_family.tbl
    • Sangmok_chloroplast_family.tbl
    • Shuijingui_chloroplast_family.tbl
    • Tieguanyin_chloroplast_family.tbl
    • Tieluohan_chloroplast_family.tbl
    • Yunkang10_chloroplast_family.tbl
    • Yunknag10_chr2_mitochondria_family.tbl
    • Yunknag10_chr2_mitochondria_family.tbl
  • Blastn
    • scz_2020ahau.blast
    • Biyun.blast
    • scz_2020hr.blast
    • LJ43.blast
    • Wildtea.blast
    • YK10.blast
    • Huangdan.blast
    • Tieguanyin.blast
    • Anhua_chloroplast_blast.txt
    • Assamica_chloroplast_blast.txt
    • Assamica_mitochondria_blast.txt
    • Baijiguan_chloroplast_blast.txt
    • Baiye1_chloroplast_blast.txt
    • Dahongpao_chloroplast_blast.txt
    • Dehungensis_chloroplast_blast.txt
    • Longjing43_chloroplast_blast.txt
    • Narcissus_chloroplast_blast.txt
    • Pubilimba_chloroplast_blast.txt
    • Rougui_chloroplast_blast.txt
    • Sangmok_chloroplast_blast.txt
    • Shuijingui_chloroplast_blast.txt
    • Tieguanyin_chloroplast_blast.txt
    • Tieluohan_chloroplast_blast.txt
    • Yunkang10_chloroplast_blast.txt
    • Yunknag10_chr2_mitochondria_blast.txt
    • Yunknag10_chr2_mitochondria_blast.txt
  • SSR
    • scz_2020ahau_ssr.txt
    • Biyun_ssr.txt
    • scz_2020hr_ssr.txt
    • LJ43_ssr.txt
    • Wildtea_ssr.txt
    • YK10_ssr.txt
    • Huangdan_ssr.txt
    • Tieguanyin_ssr.txt
• Genome-Assembly
  • Camellia sinensis var. sinensis cv. Biyun
    • Biyun.genome.zip
    • Biyun.gff.gz
  • Camellia sinensis var. sinensis cv. Longjing 43
    • Longjing43.genome.zip
    • Longjing43.gff.gz
  • Camellia sinensis var. assamica cv. Yunkang 10
    • Yunkang10.genome.zip
    • Yunkang10.gff.zip
  • Wild tea plant(DASZ)
    • DASZ.genome.zip
    • DASZ.gff.zip
  • Camellia sinensis var. sinensis cv. Shuchazao
    • SCZ_ahau.genome.gz
    • SCZ_tri.genome.zip
    • SCZ_ahau.gff3.gz
    • SCZ_tri.gff.gz
  • Camellia sinensis var. sinensis cv. Huangdan
    • Huangdan.genome.fasta.zip
    • Huangdan.gff.gz
  • Camellia sinensis var. sinensis cv. Tieguanyin
    • Tieguanyin.genome.fasta.gz
    • Tieguanyin.gff.gz
• CDS Sequence
  • Camellia sinensis var. sinensis cv. Biyun
    • Biyun.cds.gz
  • Camellia sinensis var. sinensis cv. Longjing 43
    • Longjing43.cds.gz
  • Camellia sinensis var. assamica cv. Yunkang 10
    • Yunkang10.cds.zip
  • Wild tea plant(DASZ)
    • DASZ.cds.gz
  • Camellia sinensis var. sinensis cv. Shuchazao
    • SCZ_ahau.cds.gz
    • SCZ_tri.cds.gz
  • Camellia sinensis var. sinensis cv. Huangdan
    • Huangdan.cds.fasta.zip
  • Camellia sinensis var. sinensis cv. Tieguanyin
    • Tieguanyin.cds.fasta.zip
• Protein Sequence
  • Camellia sinensis var. sinensis cv. Biyun
    • Biyun.protein.gz
  • Camellia sinensis var. sinensis cv. Longjing 43
    • Longjing43.protein.zip
  • Camellia sinensis var. assamica cv. Yunkang 10
    • Yunkang10.protein.zip
  • Wild tea plant(DASZ)
    • DASZ.protein.zip
  • Camellia sinensis var. sinensis cv. Shuchazao
    • SCZ_ahau.protein.zip
    • SCZ_tri.protein.zip
  • Camellia sinensis var. sinensis cv. Huangdan
    • Huangdan.Protein.faa.zip
  • Camellia sinensis var. sinensis cv. Tieguanyin
    • Tieguanyin.Proteins.fasta.gz
• Gene upstream 1K-4K sequences
  • Camellia sinensis var. sinensis cv. Biyun
    • Biyun_GeneUpstream1Kb.fa.zip
    • Biyun_GeneUpstream2Kb.fa.zip
    • Biyun_GeneUpstream3Kb.fa.zip
    • Biyun_GeneUpstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Longjing 43
    • Longjing-43_GeneUpstream1Kb.fa.zip
    • Longjing-43_GeneUpstream2Kb.fa.zip
    • Longjing-43_GeneUpstream3Kb.fa.zip
    • Longjing-43_GeneUpstream4Kb.fa.zip
  • Camellia sinensis var. assamica cv. Yunkang 10
    • Yunkang-10_GeneUpstream1Kb.fa.zip
    • Yunkang-10_GeneUpstream2Kb.fa.zip
    • Yunkang-10_GeneUpstream3Kb.fa.zip
    • Yunkang-10_GeneUpstream4Kb.fa.zip
  • Wild tea plant(DASZ)
    • DASZ_GeneUpstream1Kb.fa.zip
    • DASZ_GeneUpstream2Kb.fa.zip
    • DASZ_GeneUpstream3Kb.fa.zip
    • DASZ_GeneUpstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Shuchazao
    • Shuchazao_AHAU_GeneUpstream1Kb.fa.zip
    • Shuchazao_AHAU_GeneUpstream2Kb.fa.zip
    • Shuchazao_AHAU_GeneUpstream3Kb.fa.zip
    • Shuchazao_AHAU_GeneUpstream4Kb.fa.zip
    • Shuchazao_TRI_GeneUpstream1Kb.fa.zip
    • Shuchazao_TRI_GeneUpstream2Kb.fa.zip
    • Shuchazao_TRI_GeneUpstream3Kb.fa.zip
    • Shuchazao_TRI_GeneUpstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Huangdan
    • Huangdan_GeneUpstream1Kb.fa.zip
    • Huangdan_GeneUpstream2Kb.fa.zip
    • Huangdan_GeneUpstream3Kb.fa.zip
    • Huangdan_GeneUpstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Tieguanyin
    • Tieguanyin_GeneUpstream1Kb.fa.zip
    • Tieguanyin_GeneUpstream2Kb.fa.zip
    • Tieguanyin_GeneUpstream3Kb.fa.zip
    • Tieguanyin_GeneUpstream4Kb.fa.zip
• Gene downstream 1K-4K sequences
  • Camellia sinensis var. sinensis cv. Biyun
    • Biyun_GeneDownstream1Kb.fa.zip
    • Biyun_GeneDownstream2Kb.fa.zip
    • Biyun_GeneDownstream3Kb.fa.zip
    • Biyun_GeneDownstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Longjing 43
    • Longjing-43_GeneDownstream1Kb.fa.zip
    • Longjing-43_GeneDownstream2Kb.fa.zip
    • Longjing-43_GeneDownstream3Kb.fa.zip
    • Longjing-43_GeneDownstream4Kb.fa.zip
  • Camellia sinensis var. assamica cv. Yunkang 10
    • Yunkang-10_GeneDownstream1Kb.fa.zip
    • Yunkang-10_GeneDownstream2Kb.fa.zip
    • Yunkang-10_GeneDownstream3Kb.fa.zip
    • Yunkang-10_GeneDownstream4Kb.fa.zip
  • Wild tea plant(DASZ)
    • DASZ_GeneDownstream1Kb.fa.zip
    • DASZ_GeneDownstream2Kb.fa.zip
    • DASZ_GeneDownstream3Kb.fa.zip
    • DASZ_GeneDownstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Shuchazao
    • Shuchazao_AHAU_GeneDownstream1Kb.fa.zip
    • Shuchazao_AHAU_GeneDownstream2Kb.fa.zip
    • Shuchazao_AHAU_GeneDownstream3Kb.fa.zip
    • Shuchazao_AHAU_GeneDownstream4Kb.fa.zip
    • Shuchazao_TRI_GeneDownstream1Kb.fa.zip
    • Shuchazao_TRI_GeneDownstream2Kb.fa.zip
    • Shuchazao_TRI_GeneDownstream3Kb.fa.zip
    • Shuchazao_TRI_GeneDownstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Huangdan
    • Huangdan_GeneDownstream1Kb.fa.zip
    • Huangdan_GeneDownstream2Kb.fa.zip
    • Huangdan_GeneDownstream3Kb.fa.zip
    • Huangdan_GeneDownstream4Kb.fa.zip
  • Camellia sinensis var. sinensis cv. Tieguanyin
    • Tieguanyin_GeneDownstream1Kb.fa.zip
    • Tieguanyin_GeneDownstream2Kb.fa.zip
    • Tieguanyin_GeneDownstream3Kb.fa.zip
    • Tieguanyin_GeneDownstream4Kb.fa.zip
• Chloroplastid Genome
  • Camellia sinensis cultivar Anhua chloroplast genome
    • Camellia_sinensis_Anhua_chloroplast_genome.fasta
    • Camellia_sinensis_Anhua_chloroplast_cds.fasta
    • Camellia_sinensis_Anhua_chloroplast_proteins.fasta
    • Camellia_sinensis_anhua_chloroplast.gff3
  • Camellia sinensis var Assamica
    • Camellia_sinensis_Assamica_chloroplast_genome.fasta
    • Camellia_sinensis_Assamica_chloroplast_cds.fasta
    • Camellia_sinensis_Assamica_chloroplast_proteins.fasta
    • Camellia_sinensis_Assamica_chloroplast_genome.gff3
  • Camellia sinensis cultivar Baijiguan
    • Camellia_sinensis_Baijiguan_chloroplast_genome.fasta
    • Camellia_sinensis_Baijiguan_chloroplast_cds.fasta
    • Camellia_sinensis_Baijiguan_chloroplast_proteins.fasta
    • Camellia_sinensis_Baijiguan_Chloroplast_genome.gff3
  • Camellia sinensis cultivar Dahongpao
    • Camellia_sinensis_Dahongpao_chloroplast_genome.fasta
    • Camellia_sinensis_Dahongpao_chloroplast_cds.fasta
    • Camellia_sinensis_Dahongpao_chloroplast_proteins.fasta
    • Camellia_sinensis_Dahongpao_chloroplast_genome.gff3
  • Camellia sinensis cultivar Dehungensis
    • Camellia_sinensis_Dehungensis_chloroplast_cds.fasta
    • Camellia_sinensis_Dehungensis_chloroplast_genome.fasta
    • Camellia_sinensis_Dehungensis_chloroplast_proteins.fasta
    • Camellia_sinensis_Dehungensis_chloroplast_genome.gff3
  • Camellia sinensis cultivar Sangmok
    • Camellia_sinensis_Sangmok_chloroplast_cds.fasta
    • Camellia_sinensis_Sangmok_chloroplast_genome.fasta
    • Camellia_sinensis_Sangmok_chloroplast_proteins.fasta
    • Camellia_sinensis_Sangmok_chloroplast_genome.gff3
  • Camellia sinensis var sinensis cultivar Longjing 43
    • Camellia_sinensis_Longjing43_chloroplast_cds.fasta
    • Camellia_sinensis_Longjing43_chloroplast_genome.fasta
    • Camellia_sinensis_Longjing43_chloroplast_proteins.fasta
    • Camellia_sinensis_Longjing43_chloroplast_genome.gff3
  • Camellia sinensis cultivar Narcissus
    • Camellia_sinensis_Nacrissus_chloroplast_genome.fasta
    • Camellia_sinensis_Narcissusa_chloroplast_proteins.fasta
    • Camellia_sinensis_Narcissus_chloroplast_genome.gff3
  • Camellia sinensis Pubilima
    • Camellia_sinensis_Pubilimba_chloroplast_cds.fasta
    • Camellia_sinensis_Pubilimba_chloroplast_genome.fasta
    • Camellia_sinensis_Pubilimba_chloroplast_proteins.fasta
    • Camellia_sinensis_Pubilimba_chloroplast_genome.gff3
  • Camellia sinensis cultivar Rougui
    • Camellia_sinensis_Rougui_chloroplast_cds.fasta
    • Camellia_sinensis_Rougui_chloroplast_genome.fasta
    • Camellia_sinensis_Rougui_chloroplast_proteins.fasta
    • Camellia_sinensis_Rougui_chloroplast_genome.gff3
  • Camellia sinensis cultivar Shuijingui
    • Camellia_sinensis_Shuijinggui_chloroplast_cds.fasta
    • Camellia_sinensis_Shuijinggui_chloroplast_genome.fasta
    • Camellia_sinensis_Shuijingui_chloroplast_proteins.fasta
    • Camellia_sinensis_Shuijingui_chloroplast_genome.gff3
  • Camellia sinensis cultivar Tieguanyin
    • Camellia_sinensis_Tieguanyin_chloroplast_cds.fasta
    • Camellia_sinensis_Tieguanyin_chloroplast_genome.fasta
    • Camellia_sinensis_Tieguanyin_chloroplast_proteins.fasta
    • Camellia_sinensis_Tieguanyin_chloroplast_genome.gff3
  • Camellia sinensis cultivar Tieluohan
    • Camellia_sinensis_Tieluohan_chloroplast_genome.fasta
    • Camellia_sinensis_Tieluohan_chloroplast_cds.fasta
    • Camellia_sinensis_Tieluohan_chloroplast_cds.fasta
    • Camellia_sinensis_Tieluohan_chloroplast_genome.gff3
  • Camellia sinensis var assamica cultivar Yunkang10
    • Camellia_sinensis_Yunkang10_chloroplast_cds.fasta
    • Camellia_sinensis_Yunkang10_chloroplast_genome.fasta
    • Camellia_sinensis_Yunkang10_chloroplast_proteins.fasta
    • Camellia_sinensis_Yunkang10_chloroplast_genome.gff3
  • Camellia sinensis var sinensis cultivar Baiye 1
    • Camellia_sinensis_Baiye1_chloroplast_genome.fasta
    • Camellia_sinensis_Baiye1_chloroplast_cds.fasta
    • Camellia_sinensis_Baiye1_chloroplast_proteins.fasta
    • Camellia_sinensis_Baiye1_chloroplast.gff3
• Mitochondria Genome
  • Camellia sinensis var Assamica
    • Camellia_sinensis_Assamica_mitochondria_cds.fasta
    • Camellia_sinensis_Assamica_mitochondria_genome.gff3
    • Camellia_sinensis_Assamica_mitochondria_proteins.fasta
  • Camellia sinensis var assamica cultivar Yunkang10
    • Camellia_sinensis_Yunkang10_chr1_mitochondria_cds.fasta
    • Camellia_sinensis_Yunkang10_chr2_mitochondria_cds.fasta
    • Camellia_sinensis_Yunkang10_chr1_mitochondria_proteins.fasta
    • Camellia_sinensis_Yunkang10_chr2_mitochondria_proteins.fasta
    • Camellia_sinensis_Yunkang10_chr1_mitochondria_genome.gff3
    • Camellia_sinensis_Yunkang10_chr2_mitochondria_genome.gff3
• ID Conversion
  • Camellia sinensis var Sinensis cultivar Huangdan
    • Huangdan_id_conversion.txt
• species.list.csv
• README.txt