Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao TEA023243.1 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | TEA023243.1 |
Gene Family
Lyase_aromatic
Gene Attributes
| Chromosome: | chr7 |
| Cds Coordinates: | 83230554-83235494 |
| Nucleotide length: | 4940 |
| Prodicted protein length: | 706 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 17 | 696 | GO:0005737|GO:0006559|GO:0016841 |
| ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 188 | 204 | GO:0016841 |
| SUPERFAMILY | L-aspartase-like | 17 | 706 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001106 | Pfam | 55 | 527 | Aromatic amino acid lyase |
| IPR001106 | CDD | 53 | 516 | Aromatic amino acid lyase |
| IPR001106 | PANTHER | 10 | 706 | Aromatic amino acid lyase |
| IPR005922 | TIGRFAM | 17 | 696 | Phenylalanine ammonia-lyase |
| IPR023144 | Gene3D | 519 | 633 | Phenylalanine ammonia-lyase, shielding domain superfamily |
| IPR022313 | ProSitePatterns | 188 | 204 | Phenylalanine/histidine ammonia-lyases, active site |
| IPR024083 | Gene3D | 16 | 252 | Fumarase/histidase, N-terminal |
| IPR008948 | SUPERFAMILY | 17 | 706 | L-Aspartase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028247817 | 100 | 2121 | 0.0 |
| MN207173 | 99.811 | 2121 | 0.0 |
| KY615669 | 99.576 | 2121 | 0.0 |
| JQ860361 | 98.68 | 2121 | 0.0 |
| GQ227724 | 98.397 | 2121 | 0.0 |