Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao TEA023790.1 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | TEA023790.1 |
Gene Family
2OG-FeII_Oxy,DIOX_N
Gene Attributes
| Chromosome: | chr10 |
| Cds Coordinates: | 16682513-16686760 |
| Nucleotide length: | 4247 |
| Prodicted protein length: | 368 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | 2OG-Fe(II) oxygenase superfamily | 196 | 294 | GO:0016491 |
| ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 191 | 295 | GO:0016491 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR027443 | Gene3D | 6 | 334 | Isopenicillin N synthase-like |
| IPR026992 | Pfam | 39 | 149 | Non-haem dioxygenase N-terminal domain |
| IPR005123 | Pfam | 196 | 294 | Oxoglutarate/iron-dependent dioxygenase |
| IPR005123 | ProSiteProfiles | 191 | 295 | Oxoglutarate/iron-dependent dioxygenase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028251604 | 100 | 1107 | 0.0 |
| KY615688 | 99.639 | 1107 | 0.0 |
| AY641730 | 99.639 | 1107 | 0.0 |
| KY849375 | 99.368 | 1107 | 0.0 |
| HQ290517 | 99.006 | 1107 | 0.0 |
| JN944581 | 97.471 | 1107 | 0.0 |
| AB524883 | 97.63 | 633 | 0.0 |