Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao TEA032217.1 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | TEA032217.1 |
KEGG Orthology
Gene Family
Gln-synt_C,Gln-synt_N
Gene Attributes
| Chromosome: | chr3 |
| Cds Coordinates: | 160464565-160468517 |
| Nucleotide length: | 3952 |
| Prodicted protein length: | 377 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | Glutamine synthetase, catalytic domain | 169 | 275 | GO:0004356|GO:0006807 |
| Pfam | Glutamine synthetase, beta-Grasp domain | 72 | 118 | GO:0004356|GO:0006542|GO:0006807 |
| SMART | Gln_synt_C_2 | 124 | 372 | GO:0004356|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase, N-terminal domain | 46 | 123 | GO:0004356|GO:0006542|GO:0006807 |
| Gene3D | Glutamine synthetase | 34 | 124 | GO:0004356|GO:0006542|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase/guanido kinase | 125 | 374 | GO:0003824 |
Signal Peptide
SP(Sec/SPI)
CS pos:18-19.
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR008146 | Pfam | 169 | 275 | Glutamine synthetase, catalytic domain |
| IPR008147 | Pfam | 72 | 118 | Glutamine synthetase, beta-Grasp domain |
| IPR008146 | SMART | 124 | 372 | Glutamine synthetase, catalytic domain |
| IPR036651 | SUPERFAMILY | 46 | 123 | Glutamine synthetase, N-terminal domain superfamily |
| IPR027302 | ProSitePatterns | 76 | 93 | Glutamine synthetase, N-terminal conserved site |
| IPR036651 | Gene3D | 34 | 124 | Glutamine synthetase, N-terminal domain superfamily |
| IPR027303 | ProSitePatterns | 258 | 274 | Glutamine synthetase, glycine-rich site |
| IPR014746 | SUPERFAMILY | 125 | 374 | Glutamine synthetase/guanido kinase, catalytic domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028270852 | 99.9 | 1000 | 0.0 |
| JN226569 | 99.8 | 1000 | 0.0 |
| MG778703 | 99.7 | 1000 | 0.0 |
| KY649469 | 99.7 | 1000 | 0.0 |
| JQ925873 | 99.7 | 1000 | 0.0 |
| AB115183 | 99.7 | 1000 | 0.0 |
| JN602373 | 99.048 | 525 | 0.0 |
| XM_028250814 | 98.799 | 333 | 5.94e-165 |
| XM_028250814 | 98.333 | 120 | 6.99e-50 |
| XM_028204810 | 98.799 | 333 | 5.94e-165 |
| XM_028204810 | 98.333 | 120 | 6.99e-50 |
| AB085606 | 100 | 305 | 4.66e-156 |
| XM_028212849 | 96.923 | 260 | 1.06e-117 |
| XM_028212849 | 97.238 | 181 | 8.67e-79 |
| AB597268 | 95.588 | 68 | 2.62e-19 |
| AB597267 | 95.588 | 68 | 2.62e-19 |
| AB597266 | 95.588 | 68 | 2.62e-19 |
| AB597265 | 95.588 | 68 | 2.62e-19 |