Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao TEA034003.1 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | TEA034003.1 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | chr3 |
| Cds Coordinates: | 55431524-55434943 |
| Nucleotide length: | 3419 |
| Prodicted protein length: | 216 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | Chalcone-flavanone isomerase | 8 | 212 | GO:0016872 |
| SUPERFAMILY | Chalcone isomerase | 4 | 215 | GO:0016872 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016087 | Pfam | 8 | 212 | Chalcone isomerase |
| IPR016089 | Gene3D | 53 | 86 | Chalcone isomerase, orthogonal bundle domain superfamily |
| IPR044191 | PANTHER | 2 | 216 | Chalcone--flavonone isomerase 3-like |
| IPR036298 | SUPERFAMILY | 4 | 215 | Chalcone isomerase superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028214440 | 96.754 | 647 | 0.0 |
| KY615686 | 96.6 | 647 | 0.0 |
| MG720782 | 95.054 | 647 | 0.0 |
| XM_028232603 | 98.077 | 156 | 1.77e-68 |