Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao TEA034012.1 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | TEA034012.1 |
KEGG Orthology
K15394 K12425 K19102 K16124 K16093 K15664 K16094 K02364 K15666 K12421 K15675 K16428 K18000 K15662 K12709 K22152 K16432 K16430 K16416 K16122 K04792 K12444 K16121 K16099 K15660 K01043 K03822 K16229 K23667 K15384 K22148 K12743 K12240 K04784 K12237 K16101 K16098 K10526 K01904 K01897 K12442 K19103 K15668 K15665 K15659 K16123 K13611 K21059 K12239 K15018 K15663 K15654 K15661 K04789 K16375 K15658 K16131 K16095 K14469 K15655 K15395 K00155 K04788 K15653 K24101 K16378 K00666 K15667 K16391 K15656 K04780 K15670 K22739 K21792 K16228 K22118 K23665 K12701 K16119 K16120 K16126 K16129 K16130
Gene Family
AMP-binding,AMP-binding_C
Gene Attributes
| Chromosome: | chr9 |
| Cds Coordinates: | 1839606-1846290 |
| Nucleotide length: | 6684 |
| Prodicted protein length: | 585 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR020845 | ProSitePatterns | 210 | 221 | AMP-binding, conserved site |
| IPR000873 | Pfam | 52 | 466 | AMP-dependent synthetase/ligase |
| IPR042099 | Gene3D | 22 | 460 | AMP-dependent synthetase-like superfamily |
| IPR025110 | Pfam | 473 | 549 | AMP-binding enzyme, C-terminal domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028196719 | 99.319 | 1763 | 0.0 |
| KY615679 | 99.008 | 1713 | 0.0 |
| DQ194356 | 97.681 | 1768 | 0.0 |
| XR_003645807 | 97.653 | 213 | 1.03e-94 |