Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0000672.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0000672.1 |
Gene Family
Epimerase,3Beta_HSD,GDP_Man_Dehyd,NAD_binding_10,NAD_binding_4,NmrA,KR
Gene Attributes
| Chromosome: | Chr2 |
| Cds Coordinates: | 41782276-41788709 |
| Nucleotide length: | 6433 |
| Prodicted protein length: | 347 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 16 | 256 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001509 | Pfam | 16 | 256 | NAD-dependent epimerase/dehydratase |
| IPR036291 | SUPERFAMILY | 13 | 328 | NAD(P)-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MH682193 | 99.617 | 1044 | 0.0 |
| KY615690 | 99.617 | 1044 | 0.0 |
| AB018686 | 99.617 | 1044 | 0.0 |
| AB018685 | 99.617 | 1044 | 0.0 |
| MH939250 | 99.521 | 1044 | 0.0 |
| AY574920 | 99.521 | 1044 | 0.0 |
| AY648027 | 99.425 | 1044 | 0.0 |
| XM_028203817 | 99.138 | 1044 | 0.0 |
| MN276188 | 99.416 | 1027 | 0.0 |
| JN944580 | 98.372 | 1044 | 0.0 |
| AB524885 | 98.678 | 605 | 0.0 |