Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0001442.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0001442.1 |
Gene Family
Lyase_aromatic
Gene Attributes
| Chromosome: | Chr10 |
| Cds Coordinates: | 110969786-110975776 |
| Nucleotide length: | 5990 |
| Prodicted protein length: | 714 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 196 | 212 | GO:0016841 |
| TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 23 | 704 | GO:0005737|GO:0006559|GO:0016841 |
| SUPERFAMILY | L-aspartase-like | 23 | 714 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR023144 | Gene3D | 527 | 641 | Phenylalanine ammonia-lyase, shielding domain superfamily |
| IPR024083 | Gene3D | 22 | 260 | Fumarase/histidase, N-terminal |
| IPR001106 | PANTHER | 17 | 714 | Aromatic amino acid lyase |
| IPR022313 | ProSitePatterns | 196 | 212 | Phenylalanine/histidine ammonia-lyases, active site |
| IPR001106 | CDD | 59 | 524 | Aromatic amino acid lyase |
| IPR001106 | Pfam | 61 | 528 | Aromatic amino acid lyase |
| IPR005922 | TIGRFAM | 23 | 704 | Phenylalanine ammonia-lyase |
| IPR008948 | SUPERFAMILY | 23 | 714 | L-Aspartase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028210520 | 99.86 | 2145 | 0.0 |
| KY615674 | 99.534 | 2145 | 0.0 |
| D26596 | 99.534 | 2145 | 0.0 |
| MN207175 | 99.441 | 2145 | 0.0 |
| AY694188 | 98.602 | 2146 | 0.0 |
| JX161618 | 99.681 | 627 | 0.0 |
| JX161630 | 99.522 | 627 | 0.0 |
| JX161621 | 99.522 | 627 | 0.0 |
| JX161616 | 99.522 | 627 | 0.0 |
| JX161626 | 99.362 | 627 | 0.0 |
| JX161631 | 99.203 | 627 | 0.0 |
| JX161619 | 99.203 | 627 | 0.0 |
| JX161632 | 99.043 | 627 | 0.0 |
| JX161629 | 99.043 | 627 | 0.0 |
| JX161628 | 99.043 | 627 | 0.0 |
| JX161625 | 99.043 | 627 | 0.0 |
| JX161624 | 99.043 | 627 | 0.0 |
| JX161623 | 99.043 | 627 | 0.0 |
| JX161622 | 99.043 | 627 | 0.0 |
| JX161620 | 99.043 | 627 | 0.0 |
| JX161617 | 99.043 | 627 | 0.0 |
| JX161627 | 98.884 | 627 | 0.0 |