Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0002334.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0002334.1 |
Gene Family
Epimerase,3Beta_HSD,GDP_Man_Dehyd,NAD_binding_4,NAD_binding_10,NmrA
Gene Attributes
| Chromosome: | Chr11 |
| Cds Coordinates: | 16087236-16103677 |
| Nucleotide length: | 16441 |
| Prodicted protein length: | 332 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 8 | 244 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 3 | 316 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 8 | 244 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028200547 | 99.9 | 999 | 0.0 |
| MF977694 | 98.255 | 974 | 0.0 |
| KR873393 | 98.237 | 624 | 0.0 |
| XM_028250266 | 98.421 | 190 | 3.49e-87 |
| XM_028250266 | 97.076 | 171 | 2.75e-73 |
| XR_003631299 | 98.883 | 179 | 9.76e-83 |