Data Related Infomation

Camellia sinensis var. sinensis cv. Shuchazao                  CSS0003832.1                   AHAU CSS Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   No Gene Product Found
Locus Name:   CSS0003832.1

KEGG Orthology

K12644  K00660  K13234  K00660   K17212  K21386  K21385  K13232  K20503  K17211  K13233  K21384  K13231  

Gene Family

Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III,FAE1_CUT1_RppA

Gene Attributes

Chromosome:Contig790
Cds Coordinates:614219-617534
Nucleotide length:3315
Prodicted protein length:389

Gene Ontology Classification

Database Annotation Match Start Match End GO
PIRSFPKS_III2389GO:0009058|GO:0016747
Gene3D-1235GO:0016746
PANTHERHYDROXYMETHYLGLUTARYL-COA SYNTHASE2388GO:0009058|GO:0016747
SUPERFAMILYThiolase-like1231GO:0016746
ProSitePatternsChalcone and stilbene synthases active site.156172GO:0009058|GO:0016746
Gene3D-236389GO:0016746
SUPERFAMILYThiolase-like235386GO:0016746

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Name Match Start Match End E-value
NullNullNullNullNull

Interpro hits

Interpro Accession Name Match Start Match End Annotation
IPR011141PIRSF2389Polyketide synthase, type III
IPR001099Pfam5227Chalcone/stilbene synthase, N-terminal
IPR016039Gene3D1235Thiolase-like
IPR011141PANTHER2388Polyketide synthase, type III
IPR016039SUPERFAMILY1231Thiolase-like
IPR012328Pfam238387Chalcone/stilbene synthase, C-terminal
IPR018088ProSitePatterns156172Chalcone/stilbene synthase, active site
IPR016039Gene3D236389Thiolase-like
IPR016039SUPERFAMILY235386Thiolase-like

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
XM_02823759695.4658820.0
AY14669998.4547760.0
AY14671197.687760.0