Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0005259.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0005259.1 |
Gene Family
Epimerase,3Beta_HSD,NAD_binding_4,NAD_binding_10,GDP_Man_Dehyd,NmrA
Gene Attributes
| Chromosome: | Chr11 |
| Cds Coordinates: | 17317988-17331009 |
| Nucleotide length: | 13021 |
| Prodicted protein length: | 324 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 8 | 244 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001509 | Pfam | 8 | 244 | NAD-dependent epimerase/dehydratase |
| IPR036291 | SUPERFAMILY | 5 | 316 | NAD(P)-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028201955 | 99.795 | 975 | 0.0 |
| HM440158 | 99.692 | 975 | 0.0 |
| MK096704 | 98.769 | 975 | 0.0 |
| MK096705 | 98.667 | 975 | 0.0 |
| MK096708 | 98.462 | 975 | 0.0 |
| MK096706 | 98.462 | 975 | 0.0 |
| MK096707 | 98.359 | 975 | 0.0 |
| MK096709 | 98.256 | 975 | 0.0 |
| MK096710 | 98.154 | 975 | 0.0 |
| KR873394 | 98.351 | 970 | 0.0 |
| MK096713 | 98.051 | 975 | 0.0 |
| MK096711 | 98.051 | 975 | 0.0 |
| MK096714 | 97.949 | 975 | 0.0 |
| MK096715 | 97.846 | 975 | 0.0 |
| MK096712 | 97.846 | 975 | 0.0 |
| XM_028201957 | 97.231 | 975 | 0.0 |
| XM_028201956 | 97.231 | 975 | 0.0 |
| XM_028243258 | 99.153 | 354 | 2.31e-178 |