Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0005927.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0005927.1 |
Gene Family
Epimerase,GDP_Man_Dehyd,NAD_binding_10,3Beta_HSD,NmrA,NAD_binding_4
Gene Attributes
| Chromosome: | Chr8 |
| Cds Coordinates: | 26614103-26617837 |
| Nucleotide length: | 3734 |
| Prodicted protein length: | 321 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 12 | 241 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 8 | 314 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 12 | 241 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028199098 | 99.852 | 674 | 0.0 |
| XM_028199098 | 99.32 | 294 | 1.11e-146 |
| GU944768 | 99.852 | 674 | 0.0 |
| GU944768 | 99.32 | 294 | 1.11e-146 |
| MH236747 | 99.555 | 674 | 0.0 |
| MH236747 | 100 | 294 | 5.14e-150 |
| GU992400 | 99.258 | 674 | 0.0 |
| GU992400 | 98.98 | 294 | 5.18e-145 |
| KY615701 | 99.11 | 674 | 0.0 |
| KY615701 | 98.98 | 294 | 5.18e-145 |
| AY641729 | 99.11 | 674 | 0.0 |
| AY641729 | 98.98 | 294 | 5.18e-145 |
| HM003282 | 98.665 | 674 | 0.0 |
| HM003282 | 99.66 | 294 | 2.39e-148 |
| MG925481 | 98.516 | 674 | 0.0 |
| MG925481 | 98.98 | 294 | 5.18e-145 |