Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0006469.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0006469.1 |
Gene Family
Orn_Arg_deC_N
Gene Attributes
| Chromosome: | Chr6 |
| Cds Coordinates: | 167171134-167173540 |
| Nucleotide length: | 2406 |
| Prodicted protein length: | 720 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| TIGRFAM | speA: arginine decarboxylase | 49 | 676 | GO:0006527|GO:0008295|GO:0008792 |
| Gene3D | Lyase | 57 | 607 | GO:0003824 |
| PRINTS | Arginine decarboxylase signature | 250 | 272 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 529 | 554 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 583 | 604 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 226 | 247 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 200 | 215 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 378 | 395 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 118 | 133 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 142 | 156 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 504 | 525 | GO:0006527|GO:0008295|GO:0008792 |
| CDD | PLPDE_III_ADC | 109 | 604 | GO:0006527|GO:0008295|GO:0008792 |
| PIRSF | ARGDC | 38 | 679 | GO:0006527|GO:0008295|GO:0008792 |
| PANTHER | ARGININE DECARBOXYLASE | 1 | 720 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 150 | 168 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 583 | 596 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 174 | 186 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 293 | 306 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 388 | 407 | GO:0003824 |
| SUPERFAMILY | Alanine racemase C-terminal domain-like | 494 | 608 | GO:0003824 |
| Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 143 | 398 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR029066 | SUPERFAMILY | 119 | 400 | PLP-binding barrel |
| IPR002985 | TIGRFAM | 49 | 676 | Arginine decarboxylase |
| IPR009006 | Gene3D | 57 | 607 | Alanine racemase/group IV decarboxylase, C-terminal |
| IPR002985 | PRINTS | 250 | 272 | Arginine decarboxylase |
| IPR002985 | PRINTS | 529 | 554 | Arginine decarboxylase |
| IPR002985 | PRINTS | 583 | 604 | Arginine decarboxylase |
| IPR002985 | PRINTS | 226 | 247 | Arginine decarboxylase |
| IPR002985 | PRINTS | 200 | 215 | Arginine decarboxylase |
| IPR002985 | PRINTS | 378 | 395 | Arginine decarboxylase |
| IPR002985 | PRINTS | 118 | 133 | Arginine decarboxylase |
| IPR002985 | PRINTS | 142 | 156 | Arginine decarboxylase |
| IPR002985 | PRINTS | 504 | 525 | Arginine decarboxylase |
| IPR002985 | CDD | 109 | 604 | Arginine decarboxylase |
| IPR002985 | PIRSF | 38 | 679 | Arginine decarboxylase |
| IPR022653 | ProSitePatterns | 150 | 168 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
| IPR002985 | PANTHER | 1 | 720 | Arginine decarboxylase |
| IPR000183 | PRINTS | 150 | 168 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 583 | 596 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 174 | 186 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 293 | 306 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 388 | 407 | Ornithine/DAP/Arg decarboxylase |
| IPR022657 | ProSitePatterns | 331 | 344 | Orn/DAP/Arg decarboxylase 2, conserved site |
| IPR009006 | SUPERFAMILY | 494 | 608 | Alanine racemase/group IV decarboxylase, C-terminal |
| IPR029066 | Gene3D | 119 | 400 | PLP-binding barrel |
| IPR022644 | Pfam | 143 | 398 | Orn/DAP/Arg decarboxylase 2, N-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028266866 | 99.723 | 2163 | 0.0 |
| JQ653274 | 99.307 | 2163 | 0.0 |