Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0007224.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0007224.1 |
Gene Family
Gln-synt_C,Gln-synt_N
Gene Attributes
| Chromosome: | Contig518 |
| Cds Coordinates: | 122907-128530 |
| Nucleotide length: | 5623 |
| Prodicted protein length: | 382 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | Glutamine synthetase, beta-Grasp domain | 49 | 123 | GO:0004356|GO:0006542|GO:0006807 |
| Gene3D | Glutamine synthetase | 27 | 129 | GO:0004356|GO:0006542|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase/guanido kinase | 130 | 379 | GO:0003824 |
| SUPERFAMILY | Glutamine synthetase, N-terminal domain | 41 | 128 | GO:0004356|GO:0006542|GO:0006807 |
| SMART | Gln_synt_C_2 | 129 | 377 | GO:0004356|GO:0006807 |
| Pfam | Glutamine synthetase, catalytic domain | 174 | 280 | GO:0004356|GO:0006807 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR008147 | Pfam | 49 | 123 | Glutamine synthetase, beta-Grasp domain |
| IPR036651 | Gene3D | 27 | 129 | Glutamine synthetase, N-terminal domain superfamily |
| IPR014746 | SUPERFAMILY | 130 | 379 | Glutamine synthetase/guanido kinase, catalytic domain |
| IPR036651 | SUPERFAMILY | 41 | 128 | Glutamine synthetase, N-terminal domain superfamily |
| IPR008146 | SMART | 129 | 377 | Glutamine synthetase, catalytic domain |
| IPR027303 | ProSitePatterns | 263 | 279 | Glutamine synthetase, glycine-rich site |
| IPR008146 | Pfam | 174 | 280 | Glutamine synthetase, catalytic domain |
| IPR027302 | ProSitePatterns | 81 | 98 | Glutamine synthetase, N-terminal conserved site |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| AB115183 | 99.826 | 1149 | 0.0 |
| XM_028270852 | 99.219 | 1153 | 0.0 |
| JN226569 | 99.823 | 1128 | 0.0 |
| KY649469 | 99.559 | 1135 | 0.0 |
| JQ925873 | 99.734 | 1126 | 0.0 |
| MG778703 | 99.72 | 1071 | 0.0 |
| JN602373 | 99.257 | 538 | 0.0 |
| XM_028212849 | 97.759 | 357 | 1.29e-171 |
| XM_028212849 | 96.685 | 181 | 4.09e-77 |
| XM_028250814 | 98.799 | 333 | 6.02e-165 |
| XM_028250814 | 98.291 | 234 | 6.51e-110 |
| XM_028204810 | 98.799 | 333 | 6.02e-165 |
| XM_028204810 | 98.291 | 234 | 6.51e-110 |
| AB085606 | 100 | 305 | 4.72e-156 |
| KF728397 | 100 | 145 | 4.15e-67 |
| AB597268 | 95.588 | 68 | 2.66e-19 |
| AB597267 | 95.588 | 68 | 2.66e-19 |
| AB597266 | 95.588 | 68 | 2.66e-19 |
| AB597265 | 95.588 | 68 | 2.66e-19 |