Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0017197.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0017197.1 |
KEGG Orthology
No KEGG Orthology Found
Gene Family
Chal_sti_synt_N
Gene Attributes
| Chromosome: | Chr10 |
| Cds Coordinates: | 77283123-77284325 |
| Nucleotide length: | 1202 |
| Prodicted protein length: | 78 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SUPERFAMILY | Thiolase-like | 1 | 70 | GO:0016746 |
| Gene3D | - | 1 | 75 | GO:0016746 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 68 | GO:0009058|GO:0016747 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016039 | SUPERFAMILY | 1 | 70 | Thiolase-like |
| IPR001099 | Pfam | 5 | 67 | Chalcone/stilbene synthase, N-terminal |
| IPR016039 | Gene3D | 1 | 75 | Thiolase-like |
| IPR011141 | PANTHER | 2 | 68 | Polyketide synthase, type III |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028224715 | 96.552 | 203 | 2.04e-88 |
| MG720805 | 96.552 | 203 | 2.04e-88 |
| KY615682 | 96.552 | 203 | 2.04e-88 |
| D26594 | 96.552 | 203 | 2.04e-88 |
| MG720807 | 95.567 | 203 | 4.42e-85 |
| KC357708 | 95.567 | 203 | 4.42e-85 |
| MG720806 | 95.074 | 203 | 2.06e-83 |
| GU932717 | 95.556 | 45 | 2.29e-08 |