Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0017899.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0017899.1 |
KEGG Orthology
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III,FAE1_CUT1_RppA
Gene Attributes
| Chromosome: | Contig1190 |
| Cds Coordinates: | 88242-95306 |
| Nucleotide length: | 7064 |
| Prodicted protein length: | 389 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Gene3D | - | 1 | 235 | GO:0016746 |
| Gene3D | - | 236 | 389 | GO:0016746 |
| PIRSF | PKS_III | 2 | 389 | GO:0009058|GO:0016747 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 388 | GO:0009058|GO:0016747 |
| SUPERFAMILY | Thiolase-like | 1 | 231 | GO:0016746 |
| SUPERFAMILY | Thiolase-like | 235 | 386 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016039 | Gene3D | 1 | 235 | Thiolase-like |
| IPR016039 | Gene3D | 236 | 389 | Thiolase-like |
| IPR011141 | PIRSF | 2 | 389 | Polyketide synthase, type III |
| IPR011141 | PANTHER | 2 | 388 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 1 | 231 | Thiolase-like |
| IPR016039 | SUPERFAMILY | 235 | 386 | Thiolase-like |
| IPR001099 | Pfam | 5 | 227 | Chalcone/stilbene synthase, N-terminal |
| IPR012328 | Pfam | 238 | 387 | Chalcone/stilbene synthase, C-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028270488 | 99.06 | 1170 | 0.0 |
| XM_028237596 | 96.259 | 882 | 0.0 |
| AY146700 | 96.645 | 775 | 0.0 |
| AY146707 | 95.871 | 775 | 0.0 |