Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0019002.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0019002.1 |
Gene Family
2OG-FeII_Oxy,DIOX_N
Gene Attributes
| Chromosome: | Chr1 |
| Cds Coordinates: | 172500388-172503877 |
| Nucleotide length: | 3489 |
| Prodicted protein length: | 356 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | 2OG-Fe(II) oxygenase superfamily | 194 | 292 | GO:0016491 |
| ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 189 | 293 | GO:0016491 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR027443 | Gene3D | 6 | 332 | Isopenicillin N synthase-like |
| IPR005123 | Pfam | 194 | 292 | Oxoglutarate/iron-dependent dioxygenase |
| IPR005123 | ProSiteProfiles | 189 | 293 | Oxoglutarate/iron-dependent dioxygenase |
| IPR026992 | Pfam | 38 | 147 | Non-haem dioxygenase N-terminal domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615689 | 99.253 | 1071 | 0.0 |
| XM_028250542 | 99.787 | 939 | 0.0 |
| AB524884 | 98.736 | 633 | 0.0 |
| XM_028200856 | 96.328 | 354 | 1.21e-161 |
| XM_028240384 | 97.887 | 142 | 6.50e-60 |