Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0021901.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0021901.1 |
KEGG Orthology
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III,FAE1_CUT1_RppA
Gene Attributes
| Chromosome: | Chr6 |
| Cds Coordinates: | 127851084-127859620 |
| Nucleotide length: | 8536 |
| Prodicted protein length: | 375 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| PIRSF | PKS_III | 2 | 375 | GO:0009058|GO:0016747 |
| Gene3D | - | 231 | 375 | GO:0016746 |
| SUPERFAMILY | Thiolase-like | 1 | 231 | GO:0016746 |
| Gene3D | - | 1 | 230 | GO:0016746 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 374 | GO:0009058|GO:0016747 |
| SUPERFAMILY | Thiolase-like | 215 | 372 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR011141 | PIRSF | 2 | 375 | Polyketide synthase, type III |
| IPR016039 | Gene3D | 231 | 375 | Thiolase-like |
| IPR012328 | Pfam | 237 | 373 | Chalcone/stilbene synthase, C-terminal |
| IPR001099 | Pfam | 5 | 227 | Chalcone/stilbene synthase, N-terminal |
| IPR016039 | SUPERFAMILY | 1 | 231 | Thiolase-like |
| IPR016039 | Gene3D | 1 | 230 | Thiolase-like |
| IPR011141 | PANTHER | 2 | 374 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 215 | 372 | Thiolase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028270488 | 98.161 | 707 | 0.0 |
| XM_028270488 | 99.525 | 421 | 0.0 |
| XM_028237596 | 100 | 419 | 0.0 |
| XM_028237596 | 97.625 | 421 | 0.0 |
| AY146700 | 97.33 | 412 | 0.0 |
| AY146700 | 97.508 | 321 | 1.30e-151 |
| AY146707 | 96.602 | 412 | 0.0 |
| AY146707 | 97.196 | 321 | 6.03e-150 |
| AY146712 | 95.388 | 412 | 0.0 |
| AY146712 | 96.885 | 321 | 2.81e-148 |
| AY146699 | 95.639 | 321 | 1.32e-141 |
| AY146711 | 95.327 | 321 | 6.12e-140 |