Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0025319.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0025319.1 |
Gene Family
Epimerase,GDP_Man_Dehyd,NAD_binding_10,NmrA
Gene Attributes
| Chromosome: | Chr11 |
| Cds Coordinates: | 17190201-17193046 |
| Nucleotide length: | 2845 |
| Prodicted protein length: | 151 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 8 | 86 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001509 | Pfam | 8 | 86 | NAD-dependent epimerase/dehydratase |
| IPR036291 | SUPERFAMILY | 3 | 103 | NAD(P)-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028245728 | 100 | 289 | 1.40e-147 |
| XM_028245727 | 100 | 288 | 5.04e-147 |
| XM_028245726 | 97.232 | 289 | 3.07e-134 |
| XM_028245714 | 96.181 | 288 | 1.11e-128 |
| MF977692 | 96.181 | 288 | 1.11e-128 |
| XM_028209732 | 95.833 | 288 | 5.18e-127 |
| MH125248 | 96.528 | 144 | 4.42e-58 |
| XM_028261702 | 97.101 | 69 | 2.16e-21 |