Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0026308.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0026308.1 |
Gene Family
Gln-synt_C,Gln-synt_N
Gene Attributes
| Chromosome: | Chr2 |
| Cds Coordinates: | 57220652-57226669 |
| Nucleotide length: | 6017 |
| Prodicted protein length: | 356 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SUPERFAMILY | Glutamine synthetase/guanido kinase | 103 | 353 | GO:0003824 |
| Pfam | Glutamine synthetase, catalytic domain | 107 | 349 | GO:0004356|GO:0006807 |
| SMART | Gln_synt_C_2 | 103 | 351 | GO:0004356|GO:0006807 |
| Pfam | Glutamine synthetase, beta-Grasp domain | 32 | 97 | GO:0004356|GO:0006542|GO:0006807 |
| Gene3D | Glutamine synthetase | 1 | 103 | GO:0004356|GO:0006542|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase, N-terminal domain | 14 | 102 | GO:0004356|GO:0006542|GO:0006807 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR014746 | SUPERFAMILY | 103 | 353 | Glutamine synthetase/guanido kinase, catalytic domain |
| IPR008146 | Pfam | 107 | 349 | Glutamine synthetase, catalytic domain |
| IPR027302 | ProSitePatterns | 55 | 72 | Glutamine synthetase, N-terminal conserved site |
| IPR008146 | SMART | 103 | 351 | Glutamine synthetase, catalytic domain |
| IPR008147 | Pfam | 32 | 97 | Glutamine synthetase, beta-Grasp domain |
| IPR036651 | Gene3D | 1 | 103 | Glutamine synthetase, N-terminal domain superfamily |
| IPR036651 | SUPERFAMILY | 14 | 102 | Glutamine synthetase, N-terminal domain superfamily |
| IPR027303 | ProSitePatterns | 237 | 253 | Glutamine synthetase, glycine-rich site |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028256209 | 99.44 | 1071 | 0.0 |
| MG778705 | 99.346 | 1071 | 0.0 |
| KY649470 | 99.346 | 1071 | 0.0 |
| GU462131 | 99.346 | 1071 | 0.0 |
| AB115184 | 99.346 | 1071 | 0.0 |
| EU284131 | 99.253 | 1071 | 0.0 |
| EF055882 | 98.786 | 1071 | 0.0 |
| XR_003642679 | 97.368 | 190 | 8.11e-84 |
| XR_003642678 | 97.368 | 190 | 8.11e-84 |
| XR_003642677 | 97.368 | 190 | 8.11e-84 |
| XR_003642676 | 97.368 | 190 | 8.11e-84 |
| XM_028245405 | 97.368 | 190 | 8.11e-84 |
| AB597267 | 99.351 | 154 | 1.78e-70 |
| AB597267 | 98.529 | 68 | 1.14e-22 |
| AB597266 | 99.351 | 154 | 1.78e-70 |
| AB597266 | 98.529 | 68 | 1.14e-22 |
| AB597265 | 99.351 | 154 | 1.78e-70 |
| AB597265 | 98.529 | 68 | 1.14e-22 |
| AB597264 | 99.351 | 154 | 1.78e-70 |
| AB597264 | 97.059 | 68 | 5.31e-21 |
| AB597268 | 98.052 | 154 | 3.85e-67 |
| AB597268 | 98.529 | 68 | 1.14e-22 |
| XM_028245407 | 96.117 | 103 | 4.02e-37 |
| XM_028245406 | 96.117 | 103 | 4.02e-37 |
| XM_028245408 | 96.117 | 103 | 4.02e-37 |