Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0028985.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0028985.1 |
Gene Family
Orn_Arg_deC_N
Gene Attributes
| Chromosome: | Chr3 |
| Cds Coordinates: | 7476980-7479902 |
| Nucleotide length: | 2922 |
| Prodicted protein length: | 704 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Gene3D | Lyase | 58 | 608 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 294 | 307 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 151 | 169 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 175 | 187 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 389 | 408 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 586 | 599 | GO:0003824 |
| Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 146 | 399 | GO:0003824 |
| TIGRFAM | speA: arginine decarboxylase | 49 | 679 | GO:0006527|GO:0008295|GO:0008792 |
| CDD | PLPDE_III_ADC | 110 | 607 | GO:0006527|GO:0008295|GO:0008792 |
| PANTHER | ARGININE DECARBOXYLASE | 1 | 690 | GO:0006527|GO:0008295|GO:0008792 |
| PIRSF | ARGDC | 35 | 686 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 119 | 134 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 530 | 555 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 505 | 526 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 143 | 157 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 227 | 248 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 201 | 216 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 251 | 273 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 379 | 396 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 586 | 607 | GO:0006527|GO:0008295|GO:0008792 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR022657 | ProSitePatterns | 332 | 345 | Orn/DAP/Arg decarboxylase 2, conserved site |
| IPR009006 | Gene3D | 58 | 608 | Alanine racemase/group IV decarboxylase, C-terminal |
| IPR000183 | PRINTS | 294 | 307 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 151 | 169 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 175 | 187 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 389 | 408 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 586 | 599 | Ornithine/DAP/Arg decarboxylase |
| IPR022653 | ProSitePatterns | 151 | 169 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
| IPR022644 | Pfam | 146 | 399 | Orn/DAP/Arg decarboxylase 2, N-terminal |
| IPR002985 | TIGRFAM | 49 | 679 | Arginine decarboxylase |
| IPR002985 | CDD | 110 | 607 | Arginine decarboxylase |
| IPR029066 | SUPERFAMILY | 120 | 401 | PLP-binding barrel |
| IPR002985 | PANTHER | 1 | 690 | Arginine decarboxylase |
| IPR002985 | PIRSF | 35 | 686 | Arginine decarboxylase |
| IPR029066 | Gene3D | 120 | 401 | PLP-binding barrel |
| IPR002985 | PRINTS | 119 | 134 | Arginine decarboxylase |
| IPR002985 | PRINTS | 530 | 555 | Arginine decarboxylase |
| IPR002985 | PRINTS | 505 | 526 | Arginine decarboxylase |
| IPR002985 | PRINTS | 143 | 157 | Arginine decarboxylase |
| IPR002985 | PRINTS | 227 | 248 | Arginine decarboxylase |
| IPR002985 | PRINTS | 201 | 216 | Arginine decarboxylase |
| IPR002985 | PRINTS | 251 | 273 | Arginine decarboxylase |
| IPR002985 | PRINTS | 379 | 396 | Arginine decarboxylase |
| IPR002985 | PRINTS | 586 | 607 | Arginine decarboxylase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028248840 | 99.764 | 2115 | 0.0 |
| XM_028210843 | 99.574 | 470 | 0.0 |
| CP001291 | 100 | 36 | 3.03e-06 |