Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0034556.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0034556.1 |
Gene Family
Epimerase,3Beta_HSD,NAD_binding_4,NAD_binding_10,GDP_Man_Dehyd,NmrA
Gene Attributes
| Chromosome: | Chr3 |
| Cds Coordinates: | 112460260-112470220 |
| Nucleotide length: | 9960 |
| Prodicted protein length: | 282 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 13 | 250 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001509 | Pfam | 13 | 250 | NAD-dependent epimerase/dehydratase |
| IPR036291 | SUPERFAMILY | 9 | 279 | NAD(P)-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028240450 | 99.763 | 845 | 0.0 |
| XM_028240451 | 99.411 | 849 | 0.0 |
| MF977691 | 99.639 | 830 | 0.0 |
| MK889353 | 97.708 | 829 | 0.0 |
| XM_028240444 | 97.47 | 830 | 0.0 |
| XM_028262264 | 99.698 | 331 | 5.65e-169 |
| XM_028221041 | 97.059 | 340 | 2.06e-158 |
| XR_003635095 | 97.059 | 340 | 2.06e-158 |
| XR_003635096 | 98.246 | 171 | 1.07e-76 |