Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0037306.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0037306.1 |
Gene Family
Gln-synt_C,Gln-synt_N
Gene Attributes
| Chromosome: | Chr15 |
| Cds Coordinates: | 116900219-116905949 |
| Nucleotide length: | 5730 |
| Prodicted protein length: | 356 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SMART | Gln_synt_C_2 | 103 | 351 | GO:0004356|GO:0006807 |
| Pfam | Glutamine synthetase, catalytic domain | 168 | 347 | GO:0004356|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase, N-terminal domain | 12 | 102 | GO:0004356|GO:0006542|GO:0006807 |
| Pfam | Glutamine synthetase, beta-Grasp domain | 22 | 97 | GO:0004356|GO:0006542|GO:0006807 |
| Gene3D | Glutamine synthetase | 1 | 103 | GO:0004356|GO:0006542|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase/guanido kinase | 104 | 352 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR008146 | SMART | 103 | 351 | Glutamine synthetase, catalytic domain |
| IPR008146 | Pfam | 168 | 347 | Glutamine synthetase, catalytic domain |
| IPR027302 | ProSitePatterns | 55 | 72 | Glutamine synthetase, N-terminal conserved site |
| IPR036651 | SUPERFAMILY | 12 | 102 | Glutamine synthetase, N-terminal domain superfamily |
| IPR008147 | Pfam | 22 | 97 | Glutamine synthetase, beta-Grasp domain |
| IPR036651 | Gene3D | 1 | 103 | Glutamine synthetase, N-terminal domain superfamily |
| IPR027303 | ProSitePatterns | 237 | 253 | Glutamine synthetase, glycine-rich site |
| IPR014746 | SUPERFAMILY | 104 | 352 | Glutamine synthetase/guanido kinase, catalytic domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028206914 | 99.907 | 1071 | 0.0 |
| KY649471 | 99.813 | 1071 | 0.0 |
| AB117934 | 99.813 | 1071 | 0.0 |
| MG778704 | 99.44 | 1071 | 0.0 |
| KJ650042 | 98.413 | 1071 | 0.0 |
| AB597263 | 98.75 | 160 | 3.83e-72 |
| AB597263 | 100 | 73 | 4.08e-27 |
| AB597262 | 98.125 | 160 | 1.78e-70 |
| AB597262 | 100 | 73 | 4.08e-27 |
| XR_003641349 | 100 | 114 | 6.59e-50 |
| CP039349 | 100 | 35 | 5.43e-06 |
| AP019299 | 95.122 | 41 | 5.43e-06 |