Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0041448.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0041448.1 |
Gene Family
Lyase_aromatic
Gene Attributes
| Chromosome: | Chr13 |
| Cds Coordinates: | 66058096-66063557 |
| Nucleotide length: | 5461 |
| Prodicted protein length: | 609 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 91 | 107 | GO:0016841 |
| TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 6 | 599 | GO:0005737|GO:0006559|GO:0016841 |
| SUPERFAMILY | L-aspartase-like | 6 | 609 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR022313 | ProSitePatterns | 91 | 107 | Phenylalanine/histidine ammonia-lyases, active site |
| IPR024083 | Gene3D | 5 | 155 | Fumarase/histidase, N-terminal |
| IPR001106 | PANTHER | 6 | 609 | Aromatic amino acid lyase |
| IPR005922 | TIGRFAM | 6 | 599 | Phenylalanine ammonia-lyase |
| IPR023144 | Gene3D | 422 | 536 | Phenylalanine ammonia-lyase, shielding domain superfamily |
| IPR008948 | SUPERFAMILY | 6 | 609 | L-Aspartase-like |
| IPR001106 | CDD | 6 | 419 | Aromatic amino acid lyase |
| IPR001106 | Pfam | 6 | 431 | Aromatic amino acid lyase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028247817 | 99.891 | 1830 | 0.0 |
| MN207173 | 99.781 | 1830 | 0.0 |
| KY615669 | 99.672 | 1830 | 0.0 |
| JQ860361 | 98.579 | 1830 | 0.0 |
| GQ227724 | 98.361 | 1830 | 0.0 |