Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0041663.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0041663.1 |
Gene Family
Epimerase,3Beta_HSD,GDP_Man_Dehyd,NAD_binding_10,NAD_binding_4,NmrA
Gene Attributes
| Chromosome: | Contig369 |
| Cds Coordinates: | 96884-101662 |
| Nucleotide length: | 4778 |
| Prodicted protein length: | 349 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 24 | 270 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 18 | 341 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 24 | 270 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028242378 | 99.524 | 1050 | 0.0 |
| JN024667 | 99.617 | 1044 | 0.0 |
| GU992402 | 99.425 | 1044 | 0.0 |
| KF879515 | 99.042 | 1044 | 0.0 |
| KY615702 | 98.946 | 1044 | 0.0 |
| AY169404 | 98.854 | 1047 | 0.0 |
| MG925480 | 97.619 | 1050 | 0.0 |