Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0042230.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0042230.1 |
KEGG Orthology
Gene Family
Chal_sti_synt_C
Gene Attributes
| Chromosome: | Chr1 |
| Cds Coordinates: | 85044231-85044972 |
| Nucleotide length: | 741 |
| Prodicted protein length: | 168 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 50 | 72 | GO:0009058|GO:0016747 |
| Gene3D | - | 67 | 144 | GO:0016746 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 74 | 104 | GO:0009058|GO:0016747 |
| SUPERFAMILY | Thiolase-like | 68 | 107 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR012328 | Pfam | 72 | 105 | Chalcone/stilbene synthase, C-terminal |
| IPR011141 | PANTHER | 50 | 72 | Polyketide synthase, type III |
| IPR016039 | Gene3D | 67 | 144 | Thiolase-like |
| IPR011141 | PANTHER | 74 | 104 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 68 | 107 | Thiolase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| Null | Null | Null | Null |