Data Related Infomation

Camellia sinensis var. sinensis cv. Shuchazao                  CSS0050330.1                   AHAU CSS Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   No Gene Product Found
Locus Name:   CSS0050330.1

KEGG Orthology

K00265  K00264  K00266  K00284  K00264   K22480  K22086  K00302  

Gene Family

GATase_2,Glu_synthase,Glu_syn_central,GXGXG,Fer4_20,Pyr_redox_2,NAD_binding_8,Pyr_redox,FAD_oxidored,Pyr_redox_3

Gene Attributes

Chromosome:Chr1
Cds Coordinates:103140344-103152859
Nucleotide length:12515
Prodicted protein length:2115

Gene Ontology Classification

Database Annotation Match Start Match End GO
PIRSFGOGAT411433GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
PIRSFGOGAT15392113GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
PIRSFGOGAT14301533GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
PfamPyridine nucleotide-disulphide oxidoreductase18842080GO:0016491
PfamGlutamate synthase central domain594861GO:0006807|GO:0015930
Gene3DAldolase class I9101350GO:0003824
Gene3D-14331523GO:0016491
Gene3D-13531432GO:0016491
PfamConserved region in glutamate synthase9281297GO:0006537|GO:0015930|GO:0016638
SUPERFAMILYAlpha subunit of glutamate synthase, C-terminal domain13491518GO:0016491
CDDGltS_FMN9301311GO:0006537|GO:0015930|GO:0016638
TIGRFAMGOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit16062094GO:0006537|GO:0016639
Gene3DAldolase class I582909GO:0003824
Gene3D-16121748GO:0051536
PfamGXGXG motif14341517GO:0016491
PfamGXGXG motif13801430GO:0016491
SUPERFAMILYalpha-helical ferredoxin16051761GO:0051536

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Name Match Start Match End E-value
NullNullNullNullNull

Interpro hits

Interpro Accession Name Match Start Match End Annotation
IPR028261Pfam16271738Dihydroprymidine dehydrogenase domain II
IPR017932Pfam112539Glutamine amidotransferase type 2 domain
IPR029055SUPERFAMILY112542Nucleophile aminohydrolases, N-terminal
IPR012220PIRSF411433Glutamate synthase, eukaryotic
IPR012220PIRSF15392113Glutamate synthase, eukaryotic
IPR012220PIRSF14301533Glutamate synthase, eukaryotic
IPR023753Pfam18842080FAD/NAD(P)-binding domain
IPR006982Pfam594861Glutamate synthase, central-N
IPR013785Gene3D9101350Aldolase-type TIM barrel
IPR036188SUPERFAMILY17482092FAD/NAD(P)-binding domain superfamily
IPR017932ProSiteProfiles112516Glutamine amidotransferase type 2 domain
IPR036485Gene3D14331523Glutamate synthase, alpha subunit, C-terminal domain superfamily
IPR036485Gene3D13531432Glutamate synthase, alpha subunit, C-terminal domain superfamily
IPR002932Pfam9281297Glutamate synthase domain
IPR036485SUPERFAMILY13491518Glutamate synthase, alpha subunit, C-terminal domain superfamily
IPR029055Gene3D112551Nucleophile aminohydrolases, N-terminal
IPR002932CDD9301311Glutamate synthase domain
IPR006005TIGRFAM16062094Glutamate synthase, NADH/NADPH, small subunit 1
IPR013785Gene3D582909Aldolase-type TIM barrel
IPR009051Gene3D16121748Alpha-helical ferredoxin
IPR002489Pfam14341517Glutamate synthase, alpha subunit, C-terminal
IPR002489Pfam13801430Glutamate synthase, alpha subunit, C-terminal
IPR036188Gene3D18592024FAD/NAD(P)-binding domain superfamily
IPR009051SUPERFAMILY16051761Alpha-helical ferredoxin

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
XM_02825685498.76423460.0
XM_02825685499.59519740.0
XM_02825685497.74718200.0
XM_02825685498.8332574.67e-123
XM_02825685699.59519740.0
XM_02825685697.74718200.0
XM_02825685698.47713790.0
XM_02825685698.8332574.67e-123
XM_02825685599.59519740.0
XM_02825685597.74718200.0
XM_02825685598.47713790.0
XM_02825685598.8332574.67e-123
XM_028256855100639.00e-21
XM_02825467598.1910500.0
XM_02825467498.1910500.0
XM_01107770895.588681.51e-18
MH98123399.1185670.0