Data Related Infomation
Camellia sinensis var. sinensis cv. Shuchazao CSS0050436.1 AHAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSS0050436.1 |
Gene Family
Chalcone
Gene Attributes
| Chromosome: | Contig938 |
| Cds Coordinates: | 152377-172037 |
| Nucleotide length: | 19660 |
| Prodicted protein length: | 230 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | Chalcone-flavanone isomerase | 14 | 216 | GO:0016872 |
| PANTHER | CHALCONE--FLAVONONE ISOMERASE 1-RELATED | 4 | 222 | GO:0009813|GO:0045430 |
| SUPERFAMILY | Chalcone isomerase | 8 | 218 | GO:0016872 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016088 | Gene3D | 14 | 195 | Chalcone isomerase, 3-layer sandwich |
| IPR016089 | Gene3D | 62 | 216 | Chalcone isomerase, orthogonal bundle domain superfamily |
| IPR016087 | Pfam | 14 | 216 | Chalcone isomerase |
| IPR044164 | PANTHER | 4 | 222 | Chalcone--flavonone isomerase |
| IPR036298 | SUPERFAMILY | 8 | 218 | Chalcone isomerase superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615684 | 99.711 | 693 | 0.0 |
| XM_028236419 | 99.419 | 688 | 0.0 |
| DQ120521 | 99.134 | 693 | 0.0 |
| HQ269805 | 98.701 | 693 | 0.0 |