Data Related Infomation

Camellia sinensis var. sinensis cv. Biyun                  GWHPAMJR001644                   SCAU CSS Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   No Gene Product Found
Locus Name:   GWHPAMJR001644

KEGG Orthology

K08241  

Gene Family

Methyltransf_7,RRM_1

Gene Attributes

Chromosome:GWHAMJR00000317
Cds Coordinates:79334932-79340582
Nucleotide length:5650
Prodicted protein length:334

Gene Ontology Classification

Database Annotation Match Start Match End GO
PfamRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)99148GO:0003676
PANTHERS-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN269GO:0008168
SUPERFAMILYRNA-binding domain, RBD99182GO:0003676
PfamSAM dependent carboxyl methyltransferase268GO:0008168

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Name Match Start Match End E-value
NullNullNullNullNull

Interpro hits

Interpro Accession Name Match Start Match End Annotation
IPR000504Pfam99148RNA recognition motif domain
IPR042086Gene3D268Methyltransferase, alpha-helical capping domain
IPR005299PANTHER269SAM dependent carboxyl methyltransferase
IPR035979SUPERFAMILY99182RNA-binding domain superfamily
IPR029063SUPERFAMILY268S-adenosyl-L-methionine-dependent methyltransferase
IPR005299Pfam268SAM dependent carboxyl methyltransferase
IPR012677Gene3D94187Nucleotide-binding alpha-beta plait domain superfamily

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
JX64769299.0522115.75e-100
AB36288397.1292093.48e-92
AB36288696.6512091.62e-90
AB36288496.6512091.62e-90
AB29745196.6512091.62e-90
AB36288296.1722097.54e-89
AB36288595.6942093.51e-87
AB05610895.2152091.63e-85