Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR004288 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR004288 |
KEGG Orthology
Gene Family
Epimerase,3Beta_HSD,NAD_binding_10,NAD_binding_4,GDP_Man_Dehyd,NmrA
Gene Attributes
| Chromosome: | GWHAMJR00002126 |
| Cds Coordinates: | 17294966-17299825 |
| Nucleotide length: | 4859 |
| Prodicted protein length: | 413 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 13 | 206 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 10 | 391 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 13 | 206 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028243764 | 100 | 356 | 0.0 |
| XM_028243764 | 99.118 | 340 | 6.48e-170 |
| XM_028243764 | 99.375 | 160 | 9.59e-74 |
| XM_028243764 | 100 | 133 | 2.10e-60 |
| KY615693 | 100 | 356 | 0.0 |
| KY615693 | 99.412 | 340 | 1.39e-171 |
| KY615693 | 99.375 | 160 | 9.59e-74 |
| KY615693 | 98.462 | 130 | 2.12e-55 |