Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR005293 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR005293 |
KEGG Orthology
Gene Family
2OG-FeII_Oxy,DIOX_N
Gene Attributes
| Chromosome: | GWHAMJR00002126 |
| Cds Coordinates: | 90599243-90605443 |
| Nucleotide length: | 6200 |
| Prodicted protein length: | 331 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | 2OG-Fe(II) oxygenase superfamily | 199 | 290 | GO:0016491 |
| ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 193 | 292 | GO:0016491 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR027443 | Gene3D | 1 | 329 | Isopenicillin N synthase-like |
| IPR026992 | Pfam | 40 | 146 | Non-haem dioxygenase N-terminal domain |
| IPR005123 | Pfam | 199 | 290 | Oxoglutarate/iron-dependent dioxygenase |
| IPR005123 | ProSiteProfiles | 193 | 292 | Oxoglutarate/iron-dependent dioxygenase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MH232961 | 99.598 | 996 | 0.0 |
| KY615705 | 99.598 | 996 | 0.0 |
| DQ198089 | 99.498 | 996 | 0.0 |
| XM_028260716 | 99.398 | 996 | 0.0 |
| EF205150 | 99.197 | 996 | 0.0 |
| MH232962 | 98.795 | 996 | 0.0 |
| MG720696 | 97.892 | 996 | 0.0 |
| MG720708 | 97.791 | 996 | 0.0 |
| MG720704 | 97.691 | 996 | 0.0 |
| MG720697 | 97.59 | 996 | 0.0 |
| MG720705 | 97.49 | 996 | 0.0 |
| MG720698 | 97.49 | 996 | 0.0 |
| MG720706 | 97.39 | 996 | 0.0 |
| MG720707 | 97.289 | 996 | 0.0 |
| MG720699 | 97.289 | 996 | 0.0 |
| MG720700 | 97.189 | 996 | 0.0 |
| MG720701 | 97.088 | 996 | 0.0 |
| MG720702 | 96.888 | 996 | 0.0 |
| MG720703 | 96.787 | 996 | 0.0 |
| XM_028226142 | 98.33 | 539 | 0.0 |
| XM_028248690 | 99.134 | 462 | 0.0 |
| XM_028248690 | 98.684 | 76 | 3.78e-27 |