Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR005794 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR005794 |
Gene Family
NPH3,BTB
Gene Attributes
| Chromosome: | GWHAMJR00002126 |
| Cds Coordinates: | 148611593-148616709 |
| Nucleotide length: | 5116 |
| Prodicted protein length: | 585 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | BTB/POZ domain | 28 | 113 | GO:0005515 |
| ProSiteProfiles | BTB domain profile. | 29 | 97 | GO:0005515 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR000210 | Pfam | 28 | 113 | BTB/POZ domain |
| IPR000210 | ProSiteProfiles | 29 | 97 | BTB/POZ domain |
| IPR027356 | ProSiteProfiles | 203 | 487 | NPH3 domain |
| IPR027356 | Pfam | 203 | 462 | NPH3 domain |
| IPR043454 | PANTHER | 16 | 576 | NPH3/RPT2-like family |
| IPR011333 | SUPERFAMILY | 16 | 114 | SKP1/BTB/POZ domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028220001 | 99.602 | 1758 | 0.0 |