Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR006593 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR006593 |
KEGG Orthology
Gene Family
Gln-synt_C,Amidohydro_2,Gln-synt_N_2
Gene Attributes
| Chromosome: | GWHAMJR00002126 |
| Cds Coordinates: | 207048657-207064634 |
| Nucleotide length: | 15977 |
| Prodicted protein length: | 800 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Gene3D | Glutamine synthetase | 363 | 458 | GO:0004356|GO:0006542|GO:0006807 |
| SUPERFAMILY | Glutamine synthetase, N-terminal domain | 364 | 461 | GO:0004356|GO:0006542|GO:0006807 |
| Pfam | Amidohydrolase | 169 | 338 | GO:0016787 |
| SUPERFAMILY | Glutamine synthetase/guanido kinase | 462 | 789 | GO:0003824 |
| Pfam | Glutamine synthetase, catalytic domain | 463 | 791 | GO:0004356|GO:0006807 |
| Pfam | Glutamine synthetase N-terminal domain | 365 | 461 | GO:0004356|GO:0006542|GO:0006807 |
| SMART | Gln_synt_C_2 | 462 | 718 | GO:0004356|GO:0006807 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR032466 | SUPERFAMILY | 163 | 338 | Metal-dependent hydrolase |
| IPR036651 | Gene3D | 363 | 458 | Glutamine synthetase, N-terminal domain superfamily |
| IPR036651 | SUPERFAMILY | 364 | 461 | Glutamine synthetase, N-terminal domain superfamily |
| IPR006680 | Pfam | 169 | 338 | Amidohydrolase-related |
| IPR014746 | SUPERFAMILY | 462 | 789 | Glutamine synthetase/guanido kinase, catalytic domain |
| IPR008146 | Pfam | 463 | 791 | Glutamine synthetase, catalytic domain |
| IPR008147 | Pfam | 365 | 461 | Glutamine synthetase, beta-Grasp domain |
| IPR008146 | SMART | 462 | 718 | Glutamine synthetase, catalytic domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028195971 | 99.609 | 1535 | 0.0 |
| XM_028195971 | 99.763 | 422 | 0.0 |
| XM_028195971 | 99.757 | 411 | 0.0 |
| JQ925872 | 99.414 | 1535 | 0.0 |
| JQ925872 | 99.526 | 422 | 0.0 |
| JQ925872 | 98.783 | 411 | 0.0 |
| KY532105 | 99.688 | 321 | 5.95e-163 |
| KY532105 | 97.945 | 146 | 3.19e-61 |
| XM_028195579 | 99.404 | 503 | 0.0 |
| XM_028198325 | 98.117 | 478 | 0.0 |
| XM_028256178 | 99.052 | 422 | 0.0 |
| XR_003640946 | 96.009 | 426 | 0.0 |
| XR_003640945 | 96.009 | 426 | 0.0 |
| XR_003650626 | 96.658 | 389 | 0.0 |
| XM_028219734 | 97.753 | 267 | 1.35e-124 |
| XR_003648000 | 97.872 | 235 | 1.79e-108 |
| XR_003647999 | 97.872 | 235 | 1.79e-108 |
| XR_003647998 | 97.872 | 235 | 1.79e-108 |
| XR_003647995 | 97.872 | 235 | 1.79e-108 |
| XR_003647994 | 97.872 | 235 | 1.79e-108 |
| XR_003647993 | 97.872 | 235 | 1.79e-108 |
| XR_003647992 | 97.872 | 235 | 1.79e-108 |
| XM_028262639 | 97.479 | 238 | 1.79e-108 |
| XM_028262638 | 97.479 | 238 | 1.79e-108 |
| XM_028262637 | 97.479 | 238 | 1.79e-108 |
| XR_003647996 | 97.854 | 233 | 2.31e-107 |
| XR_003647997 | 98.198 | 222 | 6.48e-103 |
| XM_028268023 | 95.745 | 235 | 3.90e-100 |
| XM_028198323 | 97.701 | 174 | 3.12e-76 |
| XM_028198322 | 97.701 | 174 | 3.12e-76 |
| XR_003632157 | 96.639 | 119 | 1.52e-44 |
| XR_003632157 | 96.226 | 53 | 2.65e-12 |
| XM_028198324 | 100 | 76 | 2.00e-28 |
| XM_028266400 | 100 | 50 | 5.69e-14 |
| XR_003631023 | 96.364 | 55 | 2.05e-13 |
| XR_003642621 | 98.039 | 51 | 7.36e-13 |
| XR_003641104 | 98.039 | 51 | 7.36e-13 |
| XR_003631606 | 98.039 | 51 | 7.36e-13 |
| XR_003629527 | 98.039 | 51 | 7.36e-13 |
| XR_003648269 | 98.039 | 51 | 7.36e-13 |