Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR018094 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR018094 |
Gene Family
Linker_histone
Gene Attributes
| Chromosome: | GWHAMJR00000855 |
| Cds Coordinates: | 176383448-176389096 |
| Nucleotide length: | 5648 |
| Prodicted protein length: | 702 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 91 | 161 | GO:0000786|GO:0003677|GO:0006334 |
| SMART | AT_hook_2 | 623 | 635 | GO:0003677 |
| SMART | AT_hook_2 | 595 | 607 | GO:0003677 |
| SMART | AT_hook_2 | 326 | 336 | GO:0003677 |
| SMART | AT_hook_2 | 264 | 276 | GO:0003677 |
| SMART | h15plus2 | 89 | 155 | GO:0000786|GO:0003677|GO:0006334 |
| CDD | H15 | 89 | 149 | GO:0000786|GO:0003677|GO:0006334 |
| Pfam | linker histone H1 and H5 family | 92 | 149 | GO:0000786|GO:0003677|GO:0006334 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR005818 | ProSiteProfiles | 91 | 161 | Linker histone H1/H5, domain H15 |
| IPR017956 | SMART | 623 | 635 | AT hook, DNA-binding motif |
| IPR017956 | SMART | 595 | 607 | AT hook, DNA-binding motif |
| IPR017956 | SMART | 326 | 336 | AT hook, DNA-binding motif |
| IPR017956 | SMART | 264 | 276 | AT hook, DNA-binding motif |
| IPR036390 | SUPERFAMILY | 88 | 153 | Winged helix DNA-binding domain superfamily |
| IPR005818 | SMART | 89 | 155 | Linker histone H1/H5, domain H15 |
| IPR005818 | CDD | 89 | 149 | Linker histone H1/H5, domain H15 |
| IPR005818 | Pfam | 92 | 149 | Linker histone H1/H5, domain H15 |
| IPR036388 | Gene3D | 87 | 165 | Winged helix-like DNA-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028234134 | 99.894 | 946 | 0.0 |
| XM_028271769 | 95.536 | 112 | 3.72e-40 |