Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR023817 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR023817 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | GWHAMJR00002849 |
| Cds Coordinates: | 166076522-166086096 |
| Nucleotide length: | 9574 |
| Prodicted protein length: | 866 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SUPERFAMILY | Chalcone isomerase | 690 | 787 | GO:0016872 |
| Pfam | Chalcone-flavanone isomerase | 688 | 778 | GO:0016872 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036298 | SUPERFAMILY | 690 | 787 | Chalcone isomerase superfamily |
| IPR016087 | Pfam | 688 | 778 | Chalcone isomerase |
| IPR016088 | Gene3D | 683 | 802 | Chalcone isomerase, 3-layer sandwich |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028225073 | 99.782 | 1831 | 0.0 |
| XM_028225073 | 96.774 | 62 | 1.02e-16 |
| XM_028198929 | 95.408 | 196 | 4.35e-80 |
| MG720784 | 98.092 | 262 | 6.83e-123 |
| MG720783 | 98.092 | 262 | 6.83e-123 |
| MG720782 | 98.092 | 262 | 6.83e-123 |
| MG720779 | 98.092 | 262 | 6.83e-123 |
| MG720777 | 98.099 | 263 | 6.83e-123 |
| MG720776 | 98.092 | 262 | 6.83e-123 |
| XM_028214440 | 97.71 | 262 | 3.18e-121 |
| MG720785 | 97.71 | 262 | 3.18e-121 |
| MG720781 | 97.71 | 262 | 3.18e-121 |
| MG720780 | 97.71 | 262 | 3.18e-121 |
| MG720778 | 97.719 | 263 | 3.18e-121 |
| KY615686 | 97.71 | 262 | 3.18e-121 |
| XM_028232603 | 98.77 | 244 | 8.90e-117 |
| XM_028232603 | 96.296 | 162 | 3.43e-66 |
| XM_028270426 | 98.381 | 247 | 8.90e-117 |