Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR023855 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR023855 |
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III
Gene Attributes
| Chromosome: | GWHAMJR00002849 |
| Cds Coordinates: | 168790258-168791763 |
| Nucleotide length: | 1505 |
| Prodicted protein length: | 354 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Gene3D | - | 1 | 224 | GO:0016746 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 226 | 349 | GO:0009058|GO:0016747 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 225 | GO:0009058|GO:0016747 |
| Gene3D | - | 225 | 349 | GO:0016746 |
| PIRSF | PKS_III | 224 | 348 | GO:0009058|GO:0016747 |
| PIRSF | PKS_III | 2 | 228 | GO:0009058|GO:0016747 |
| ProSitePatterns | Chalcone and stilbene synthases active site. | 156 | 172 | GO:0009058|GO:0016746 |
| SUPERFAMILY | Thiolase-like | 227 | 347 | GO:0016746 |
| SUPERFAMILY | Thiolase-like | 1 | 228 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001099 | Pfam | 5 | 226 | Chalcone/stilbene synthase, N-terminal |
| IPR016039 | Gene3D | 1 | 224 | Thiolase-like |
| IPR011141 | PANTHER | 226 | 349 | Polyketide synthase, type III |
| IPR011141 | PANTHER | 2 | 225 | Polyketide synthase, type III |
| IPR016039 | Gene3D | 225 | 349 | Thiolase-like |
| IPR011141 | PIRSF | 224 | 348 | Polyketide synthase, type III |
| IPR011141 | PIRSF | 2 | 228 | Polyketide synthase, type III |
| IPR018088 | ProSitePatterns | 156 | 172 | Chalcone/stilbene synthase, active site |
| IPR016039 | SUPERFAMILY | 227 | 347 | Thiolase-like |
| IPR016039 | SUPERFAMILY | 1 | 228 | Thiolase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615683 | 96.439 | 674 | 0.0 |
| KC357709 | 96.439 | 674 | 0.0 |
| D26595 | 96.439 | 674 | 0.0 |
| AY656677 | 96.291 | 674 | 0.0 |
| XM_028211684 | 96.142 | 674 | 0.0 |
| JN944575 | 96.142 | 674 | 0.0 |
| XM_028211685 | 98.068 | 621 | 0.0 |
| XM_028211685 | 96.173 | 392 | 7.05e-179 |
| XM_028269414 | 99.235 | 392 | 0.0 |
| KC357706 | 95.968 | 496 | 0.0 |
| KC357706 | 96.791 | 187 | 1.75e-80 |
| MG720794 | 95.085 | 468 | 0.0 |
| AY146709 | 99.211 | 380 | 0.0 |
| AY146709 | 97.826 | 322 | 7.30e-154 |
| AY146701 | 98.684 | 380 | 0.0 |
| AY146701 | 97.516 | 322 | 3.40e-152 |
| AY146710 | 96.579 | 380 | 4.24e-176 |
| AY146702 | 96.579 | 380 | 4.24e-176 |
| AY146697 | 96.325 | 381 | 5.49e-175 |
| AY146705 | 95.526 | 380 | 1.99e-169 |