Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR023856 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR023856 |
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III_C,ACP_syn_III,FAE1_CUT1_RppA
Gene Attributes
| Chromosome: | GWHAMJR00002849 |
| Cds Coordinates: | 168811284-168812819 |
| Nucleotide length: | 1535 |
| Prodicted protein length: | 389 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Gene3D | - | 1 | 235 | GO:0016746 |
| SUPERFAMILY | Thiolase-like | 1 | 233 | GO:0016746 |
| Gene3D | - | 236 | 388 | GO:0016746 |
| PIRSF | PKS_III | 2 | 388 | GO:0009058|GO:0016747 |
| ProSitePatterns | Chalcone and stilbene synthases active site. | 156 | 172 | GO:0009058|GO:0016746 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 387 | GO:0009058|GO:0016747 |
| SUPERFAMILY | Thiolase-like | 235 | 386 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016039 | Gene3D | 1 | 235 | Thiolase-like |
| IPR016039 | SUPERFAMILY | 1 | 233 | Thiolase-like |
| IPR012328 | Pfam | 238 | 387 | Chalcone/stilbene synthase, C-terminal |
| IPR016039 | Gene3D | 236 | 388 | Thiolase-like |
| IPR011141 | PIRSF | 2 | 388 | Polyketide synthase, type III |
| IPR018088 | ProSitePatterns | 156 | 172 | Chalcone/stilbene synthase, active site |
| IPR011141 | PANTHER | 2 | 387 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 235 | 386 | Thiolase-like |
| IPR001099 | Pfam | 5 | 228 | Chalcone/stilbene synthase, N-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615683 | 99.658 | 1170 | 0.0 |
| KC357709 | 99.658 | 1170 | 0.0 |
| AY656677 | 99.658 | 1170 | 0.0 |
| D26595 | 99.658 | 1170 | 0.0 |
| XM_028211684 | 99.573 | 1170 | 0.0 |
| JN944575 | 97.949 | 1170 | 0.0 |
| XM_028211685 | 98.299 | 1117 | 0.0 |
| KC357706 | 99.698 | 992 | 0.0 |
| KC357706 | 100 | 179 | 5.31e-86 |
| MG720794 | 97.092 | 963 | 0.0 |
| AY146702 | 98.711 | 776 | 0.0 |
| AY146710 | 98.582 | 776 | 0.0 |
| AY146697 | 98.072 | 778 | 0.0 |
| AY146705 | 97.938 | 776 | 0.0 |
| AY146701 | 95.49 | 776 | 0.0 |
| AY570927 | 96.62 | 503 | 0.0 |