Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR023857 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR023857 |
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III_C,ACP_syn_III,FAE1_CUT1_RppA
Gene Attributes
| Chromosome: | GWHAMJR00002849 |
| Cds Coordinates: | 168853818-168855381 |
| Nucleotide length: | 1563 |
| Prodicted protein length: | 389 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 388 | GO:0009058|GO:0016747 |
| SUPERFAMILY | Thiolase-like | 235 | 386 | GO:0016746 |
| PIRSF | PKS_III | 2 | 389 | GO:0009058|GO:0016747 |
| Gene3D | - | 236 | 389 | GO:0016746 |
| ProSitePatterns | Chalcone and stilbene synthases active site. | 156 | 172 | GO:0009058|GO:0016746 |
| Gene3D | - | 1 | 235 | GO:0016746 |
| SUPERFAMILY | Thiolase-like | 1 | 233 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR011141 | PANTHER | 2 | 388 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 235 | 386 | Thiolase-like |
| IPR011141 | PIRSF | 2 | 389 | Polyketide synthase, type III |
| IPR016039 | Gene3D | 236 | 389 | Thiolase-like |
| IPR018088 | ProSitePatterns | 156 | 172 | Chalcone/stilbene synthase, active site |
| IPR016039 | Gene3D | 1 | 235 | Thiolase-like |
| IPR016039 | SUPERFAMILY | 1 | 233 | Thiolase-like |
| IPR001099 | Pfam | 5 | 228 | Chalcone/stilbene synthase, N-terminal |
| IPR012328 | Pfam | 238 | 387 | Chalcone/stilbene synthase, C-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615681 | 99.829 | 1170 | 0.0 |
| D26593 | 99.829 | 1170 | 0.0 |
| XM_028211683 | 99.744 | 1170 | 0.0 |
| KC357707 | 99.744 | 1170 | 0.0 |
| JQ247184 | 99.402 | 1170 | 0.0 |
| AY169403 | 99.145 | 1170 | 0.0 |
| AB512766 | 98.803 | 1170 | 0.0 |
| JN944573 | 98.547 | 1170 | 0.0 |
| HQ269804 | 98.376 | 1170 | 0.0 |
| MG720809 | 97.778 | 1170 | 0.0 |
| MG720797 | 97.778 | 1170 | 0.0 |
| MG720810 | 97.521 | 1170 | 0.0 |
| MG720798 | 97.436 | 1170 | 0.0 |
| MG720811 | 97.265 | 1170 | 0.0 |
| MG720808 | 97.265 | 1170 | 0.0 |
| MG720799 | 97.179 | 1170 | 0.0 |
| MG720801 | 96.838 | 1170 | 0.0 |
| MG720800 | 96.838 | 1170 | 0.0 |
| KC357705 | 99.899 | 992 | 0.0 |
| KC357705 | 100 | 180 | 1.48e-86 |
| JQ269640 | 99.135 | 809 | 0.0 |
| AY146698 | 98.069 | 777 | 0.0 |
| AY146703 | 97.812 | 777 | 0.0 |
| MG720804 | 98.163 | 762 | 0.0 |
| MG720793 | 98.031 | 762 | 0.0 |
| MG720795 | 97.9 | 762 | 0.0 |
| MG720796 | 97.769 | 762 | 0.0 |
| AY146706 | 96.778 | 776 | 0.0 |
| AY570926 | 99.068 | 429 | 0.0 |
| KJ866952 | 99.708 | 342 | 6.05e-175 |