Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR026439 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR026439 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | GWHAMJR00002848 |
| Cds Coordinates: | 109873070-109874308 |
| Nucleotide length: | 1238 |
| Prodicted protein length: | 158 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | Chalcone-flavanone isomerase | 10 | 151 | GO:0016872 |
| SUPERFAMILY | Chalcone isomerase | 10 | 153 | GO:0016872 |
| PANTHER | CHALCONE--FLAVONONE ISOMERASE 1-RELATED | 10 | 155 | GO:0009813|GO:0045430 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016087 | Pfam | 10 | 151 | Chalcone isomerase |
| IPR036298 | SUPERFAMILY | 10 | 153 | Chalcone isomerase superfamily |
| IPR016089 | Gene3D | 129 | 154 | Chalcone isomerase, orthogonal bundle domain superfamily |
| IPR016088 | Gene3D | 5 | 128 | Chalcone isomerase, 3-layer sandwich |
| IPR044164 | PANTHER | 10 | 155 | Chalcone--flavonone isomerase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028263815 | 100 | 227 | 4.30e-113 |
| XM_028263815 | 98.315 | 178 | 7.50e-81 |
| HQ269805 | 98.238 | 227 | 2.01e-106 |
| XM_028236419 | 96.916 | 227 | 2.03e-101 |
| KY615684 | 96.916 | 227 | 2.03e-101 |
| DQ120521 | 96.916 | 227 | 2.03e-101 |
| XM_028263816 | 98.315 | 178 | 7.50e-81 |
| XM_028263816 | 100 | 120 | 1.30e-53 |
| XM_028263816 | 100 | 49 | 3.83e-14 |