Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR029301 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR029301 |
KEGG Orthology
Gene Family
GATase_2,Glu_synthase,Glu_syn_central,GXGXG
Gene Attributes
| Chromosome: | GWHAMJR00000548 |
| Cds Coordinates: | 160600783-160659489 |
| Nucleotide length: | 58706 |
| Prodicted protein length: | 1657 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SUPERFAMILY | Alpha subunit of glutamate synthase, C-terminal domain | 1486 | 1638 | GO:0016491 |
| Pfam | Glutamate synthase central domain | 626 | 867 | GO:0006807|GO:0015930 |
| Pfam | Conserved region in glutamate synthase | 1298 | 1431 | GO:0006537|GO:0015930|GO:0016638 |
| Pfam | Conserved region in glutamate synthase | 934 | 1184 | GO:0006537|GO:0015930|GO:0016638 |
| CDD | GltS_FMN | 936 | 1444 | GO:0006537|GO:0015930|GO:0016638 |
| Pfam | GXGXG motif | 1513 | 1576 | GO:0016491 |
| Gene3D | Aldolase class I | 605 | 919 | GO:0003824 |
| Gene3D | - | 1577 | 1655 | GO:0016491 |
| Gene3D | - | 1486 | 1576 | GO:0016491 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036485 | SUPERFAMILY | 1486 | 1638 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR006982 | Pfam | 626 | 867 | Glutamate synthase, central-N |
| IPR029055 | SUPERFAMILY | 114 | 540 | Nucleophile aminohydrolases, N-terminal |
| IPR017932 | ProSiteProfiles | 114 | 513 | Glutamine amidotransferase type 2 domain |
| IPR029055 | Gene3D | 114 | 548 | Nucleophile aminohydrolases, N-terminal |
| IPR002932 | Pfam | 1298 | 1431 | Glutamate synthase domain |
| IPR002932 | Pfam | 934 | 1184 | Glutamate synthase domain |
| IPR002932 | CDD | 936 | 1444 | Glutamate synthase domain |
| IPR002489 | Pfam | 1513 | 1576 | Glutamate synthase, alpha subunit, C-terminal |
| IPR013785 | Gene3D | 605 | 919 | Aldolase-type TIM barrel |
| IPR036485 | Gene3D | 1577 | 1655 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR036485 | Gene3D | 1486 | 1576 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR017932 | Pfam | 114 | 536 | Glutamine amidotransferase type 2 domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028201108 | 99.941 | 1696 | 0.0 |
| XM_028201109 | 99.931 | 1456 | 0.0 |
| XM_028201111 | 99.931 | 1455 | 0.0 |
| XM_028237347 | 99.896 | 958 | 0.0 |
| XM_028237347 | 99.88 | 835 | 0.0 |
| XM_028237347 | 100 | 437 | 0.0 |
| XM_028237347 | 98.658 | 298 | 2.75e-144 |
| XM_028237347 | 99.197 | 249 | 6.11e-121 |
| JN602371 | 99.749 | 399 | 0.0 |
| JN602371 | 99.528 | 212 | 4.86e-102 |
| XM_028256664 | 97.674 | 86 | 2.50e-30 |
| XM_028250370 | 99.265 | 272 | 1.00e-133 |
| XR_003646180 | 96.8 | 250 | 1.72e-111 |
| XR_003646180 | 95.455 | 242 | 4.86e-102 |
| XM_028208003 | 98.23 | 226 | 8.08e-105 |
| XM_028256661 | 95.455 | 242 | 4.86e-102 |
| XM_028256661 | 95.506 | 89 | 1.16e-28 |
| XM_028224998 | 97.345 | 226 | 1.75e-101 |
| XM_028224205 | 96.875 | 192 | 1.39e-82 |
| XM_028224205 | 96.939 | 98 | 8.92e-35 |
| XM_028224204 | 96.875 | 192 | 1.39e-82 |
| XM_028224204 | 96.939 | 98 | 8.92e-35 |
| XM_028212364 | 99.355 | 155 | 2.36e-70 |
| XR_003646181 | 97.468 | 79 | 1.94e-26 |