Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR033425 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR033425 |
Gene Family
2OG-FeII_Oxy,DIOX_N
Gene Attributes
| Chromosome: | GWHAMJR00002298 |
| Cds Coordinates: | 138394415-138397554 |
| Nucleotide length: | 3139 |
| Prodicted protein length: | 355 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | 2OG-Fe(II) oxygenase superfamily | 214 | 310 | GO:0016491 |
| ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 211 | 310 | GO:0016491 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR005123 | Pfam | 214 | 310 | Oxoglutarate/iron-dependent dioxygenase |
| IPR027443 | Gene3D | 4 | 353 | Isopenicillin N synthase-like |
| IPR005123 | ProSiteProfiles | 211 | 310 | Oxoglutarate/iron-dependent dioxygenase |
| IPR026992 | Pfam | 50 | 163 | Non-haem dioxygenase N-terminal domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MN266485 | 100 | 1068 | 0.0 |
| XM_028231520 | 99.906 | 1068 | 0.0 |
| AY830416 | 99.345 | 1068 | 0.0 |
| KY615703 | 99.343 | 1065 | 0.0 |
| KT215319 | 99.892 | 924 | 0.0 |