Data Related Infomation
Camellia sinensis var. sinensis cv. Biyun GWHPAMJR034796 SCAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAMJR034796 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | GWHAMJR00000250 |
| Cds Coordinates: | 54670449-54673157 |
| Nucleotide length: | 2708 |
| Prodicted protein length: | 225 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SUPERFAMILY | Chalcone isomerase | 65 | 146 | GO:0016872 |
| Pfam | Chalcone-flavanone isomerase | 66 | 138 | GO:0016872 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036298 | SUPERFAMILY | 65 | 146 | Chalcone isomerase superfamily |
| IPR016087 | Pfam | 66 | 138 | Chalcone isomerase |
| IPR016088 | Gene3D | 58 | 162 | Chalcone isomerase, 3-layer sandwich |
| IPR044191 | PANTHER | 61 | 143 | Chalcone--flavonone isomerase 3-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028232603 | 100 | 343 | 2.05e-177 |
| XM_028232603 | 100 | 244 | 2.22e-122 |
| XM_028270426 | 96.761 | 247 | 4.86e-109 |
| MG720784 | 95.984 | 249 | 8.14e-107 |
| MG720783 | 95.984 | 249 | 8.14e-107 |
| MG720782 | 95.984 | 249 | 8.14e-107 |
| MG720779 | 95.984 | 249 | 8.14e-107 |
| MG720777 | 95.984 | 249 | 8.14e-107 |
| MG720776 | 95.984 | 249 | 8.14e-107 |
| XM_028214440 | 95.582 | 249 | 3.79e-105 |
| MG720785 | 95.582 | 249 | 3.79e-105 |
| MG720781 | 95.582 | 249 | 3.79e-105 |
| MG720780 | 95.582 | 249 | 3.79e-105 |
| MG720778 | 95.582 | 249 | 3.79e-105 |
| KY615686 | 95.582 | 249 | 3.79e-105 |