Data Related Infomation
Camellia sinensis Wild Tea(DASZ) GWHPABKB020691 HZAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPABKB020691 |
Gene Family
NmrA,TPR_2,TPR_1,TPR_11,TPR_14,TPR_8,TPR_17,TPR_19,TPR_7,TPR_16,TPR_12
Gene Attributes
| Chromosome: | GWHABKB00000003 |
| Cds Coordinates: | 264079552-264111754 |
| Nucleotide length: | 32202 |
| Prodicted protein length: | 1264 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| ProSiteProfiles | TPR repeat profile. | 83 | 116 | GO:0005515 |
| SMART | tpr_5 | 45 | 81 | GO:0005515 |
| SMART | tpr_5 | 557 | 590 | GO:0005515 |
| SMART | tpr_5 | 453 | 486 | GO:0005515 |
| SMART | tpr_5 | 82 | 116 | GO:0005515 |
| SMART | tpr_5 | 229 | 262 | GO:0005515 |
| SMART | tpr_5 | 195 | 228 | GO:0005515 |
| ProSiteProfiles | TPR repeat region circular profile. | 31 | 262 | GO:0005515 |
| Gene3D | - | 30 | 162 | GO:0005515 |
| ProSiteProfiles | TPR repeat profile. | 195 | 228 | GO:0005515 |
| Pfam | Tetratricopeptide repeat | 199 | 225 | GO:0005515 |
| ProSiteProfiles | TPR repeat profile. | 453 | 486 | GO:0005515 |
| SUPERFAMILY | TPR-like | 31 | 133 | GO:0005515 |
| ProSiteProfiles | TPR repeat profile. | 229 | 262 | GO:0005515 |
| SUPERFAMILY | TPR-like | 197 | 584 | GO:0005515 |
| Gene3D | - | 415 | 669 | GO:0005515 |
| ProSiteProfiles | TPR repeat region circular profile. | 453 | 486 | GO:0005515 |
| PANTHER | SUPERKILLER 3 PROTEIN-RELATED | 31 | 895 | GO:0006401|GO:0055087 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR019734 | ProSiteProfiles | 83 | 116 | Tetratricopeptide repeat |
| IPR019734 | SMART | 45 | 81 | Tetratricopeptide repeat |
| IPR019734 | SMART | 557 | 590 | Tetratricopeptide repeat |
| IPR019734 | SMART | 453 | 486 | Tetratricopeptide repeat |
| IPR019734 | SMART | 82 | 116 | Tetratricopeptide repeat |
| IPR019734 | SMART | 229 | 262 | Tetratricopeptide repeat |
| IPR019734 | SMART | 195 | 228 | Tetratricopeptide repeat |
| IPR013026 | ProSiteProfiles | 31 | 262 | Tetratricopeptide repeat-containing domain |
| IPR011990 | Gene3D | 30 | 162 | Tetratricopeptide-like helical domain superfamily |
| IPR019734 | ProSiteProfiles | 195 | 228 | Tetratricopeptide repeat |
| IPR019734 | Pfam | 199 | 225 | Tetratricopeptide repeat |
| IPR019734 | ProSiteProfiles | 453 | 486 | Tetratricopeptide repeat |
| IPR011990 | SUPERFAMILY | 31 | 133 | Tetratricopeptide-like helical domain superfamily |
| IPR019734 | ProSiteProfiles | 229 | 262 | Tetratricopeptide repeat |
| IPR008030 | Pfam | 1085 | 1207 | NmrA-like domain |
| IPR011990 | SUPERFAMILY | 197 | 584 | Tetratricopeptide-like helical domain superfamily |
| IPR011990 | Gene3D | 415 | 669 | Tetratricopeptide-like helical domain superfamily |
| IPR013026 | ProSiteProfiles | 453 | 486 | Tetratricopeptide repeat-containing domain |
| IPR036291 | SUPERFAMILY | 1083 | 1182 | NAD(P)-binding domain superfamily |
| IPR039226 | PANTHER | 31 | 895 | Ski3/TTC37 |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028210606 | 99.061 | 2662 | 0.0 |
| XM_028210606 | 95.902 | 488 | 0.0 |
| XM_028210606 | 100 | 58 | 3.23e-18 |
| XM_023894410 | 96.078 | 51 | 5.44e-11 |
| XM_028207936 | 97.436 | 39 | 5.48e-06 |