Data Related Infomation
Camellia sinensis Wild Tea(DASZ) GWHPABKB021116 HZAU CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPABKB021116 |
Gene Family
UFD1,Orn_Arg_deC_N
Gene Attributes
| Chromosome: | GWHABKB00000004 |
| Cds Coordinates: | 49878807-49931653 |
| Nucleotide length: | 52846 |
| Prodicted protein length: | 1053 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 146 | 399 | GO:0003824 |
| TIGRFAM | speA: arginine decarboxylase | 49 | 679 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 294 | 307 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 151 | 169 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 389 | 408 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 586 | 599 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 175 | 187 | GO:0003824 |
| Pfam | Ubiquitin fusion degradation protein UFD1 | 757 | 917 | GO:0006511 |
| PRINTS | Arginine decarboxylase signature | 530 | 555 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 227 | 248 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 201 | 216 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 143 | 157 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 251 | 273 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 379 | 396 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 505 | 526 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 119 | 134 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 586 | 607 | GO:0006527|GO:0008295|GO:0008792 |
| CDD | PLPDE_III_ADC | 110 | 607 | GO:0006527|GO:0008295|GO:0008792 |
| PANTHER | ARGININE DECARBOXYLASE | 1 | 689 | GO:0006527|GO:0008295|GO:0008792 |
| Gene3D | Lyase | 58 | 608 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR022644 | Pfam | 146 | 399 | Orn/DAP/Arg decarboxylase 2, N-terminal |
| IPR002985 | TIGRFAM | 49 | 679 | Arginine decarboxylase |
| IPR000183 | PRINTS | 294 | 307 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 151 | 169 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 389 | 408 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 586 | 599 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 175 | 187 | Ornithine/DAP/Arg decarboxylase |
| IPR022653 | ProSitePatterns | 151 | 169 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
| IPR004854 | Pfam | 757 | 917 | Ubiquitin fusion degradation protein Ufd1-like |
| IPR002985 | PRINTS | 530 | 555 | Arginine decarboxylase |
| IPR002985 | PRINTS | 227 | 248 | Arginine decarboxylase |
| IPR002985 | PRINTS | 201 | 216 | Arginine decarboxylase |
| IPR002985 | PRINTS | 143 | 157 | Arginine decarboxylase |
| IPR002985 | PRINTS | 251 | 273 | Arginine decarboxylase |
| IPR002985 | PRINTS | 379 | 396 | Arginine decarboxylase |
| IPR002985 | PRINTS | 505 | 526 | Arginine decarboxylase |
| IPR002985 | PRINTS | 119 | 134 | Arginine decarboxylase |
| IPR002985 | PRINTS | 586 | 607 | Arginine decarboxylase |
| IPR029066 | Gene3D | 120 | 401 | PLP-binding barrel |
| IPR029066 | SUPERFAMILY | 120 | 401 | PLP-binding barrel |
| IPR002985 | CDD | 110 | 607 | Arginine decarboxylase |
| IPR022657 | ProSitePatterns | 332 | 345 | Orn/DAP/Arg decarboxylase 2, conserved site |
| IPR042299 | Gene3D | 749 | 841 | Ufd1-like, Nn domain |
| IPR002985 | PANTHER | 1 | 689 | Arginine decarboxylase |
| IPR009006 | Gene3D | 58 | 608 | Alanine racemase/group IV decarboxylase, C-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028248840 | 99.664 | 2084 | 0.0 |
| XM_028250475 | 99.453 | 731 | 0.0 |
| XM_028250475 | 99.065 | 107 | 7.20e-44 |
| XM_028250475 | 100 | 92 | 3.38e-37 |
| XM_028250475 | 100 | 54 | 4.49e-16 |
| XM_028266865 | 96.262 | 107 | 7.26e-39 |
| XM_028266864 | 96.262 | 107 | 7.26e-39 |
| XM_028210843 | 99.574 | 470 | 0.0 |
| XM_028209675 | 97.115 | 104 | 7.26e-39 |
| XR_003648959 | 97.115 | 104 | 7.26e-39 |
| XM_028250484 | 98.193 | 166 | 2.48e-73 |
| XM_028241835 | 95.192 | 104 | 1.57e-35 |
| CP001291 | 100 | 36 | 4.56e-06 |