Data Related Infomation
Camellia Sinesis var. sinensis cv. Huangdan GWHPAZTZ000841 FAFU release 1 annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAZTZ000841 |
KEGG Orthology
Gene Family
Integrase_H2C2
Gene Attributes
| Chromosome: | GWHAZTZ00000001 |
| Cds Coordinates: | 47244082-47242681 |
| Nucleotide length: | 1569 |
| Prodicted protein length: | 522 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Gene3D | - | 104 | 306 | GO:0003676 |
| ProSiteProfiles | Integrase catalytic domain profile. | 107 | 270 | GO:0015074 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF17921.2 | 22 | 469 | Integrase zinc binding domain | 1e-5 |
| PF17921.2 | 22 | 469 | Integrase zinc binding domain | 1e-5 |
| PF00665.27 | 22 | 469 | Integrase core domain | 1e-5 |
| PF00665.27 | 22 | 469 | Integrase core domain | 1e-5 |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036397 | Gene3D | 104 | 306 | Ribonuclease H superfamily |
| IPR001584 | ProSiteProfiles | 107 | 270 | Integrase, catalytic core |
| IPR012337 | SUPERFAMILY | 108 | 266 | Ribonuclease H-like superfamily |
| IPR041588 | Pfam | 41 | 96 | Integrase zinc-binding domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KF728560.1 | 91.121 | 901 | 0.0 |